R Code, Data, and Output Supporting: A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring
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2014-09-09
2021-08-06
2021-08-06
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2022-12-16
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Title
R Code, Data, and Output Supporting: A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring
Published Date
2022-12-19
Author Contact
Bajcz, Alex W
bajcz003@umn.edu
bajcz003@umn.edu
Type
Dataset
Abstract
These data and files support the published paper "A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring" | Scientific Reports (nature.com). It contains both input files and data as well as processed output files from the modeling effort described in the paper, which uses predictor variables to predict both occupancy and detection for within-lake locations by starry stonewort, an invasive aquatic macrophyte. The files being submitted include everything needed to fully replicate and further interpret our results and provide a framework for constructing similar models in similar contexts.
Description
Please see the readme file provided in this submission for details on the files included here, which include raw and processed data files as well as several R scripts.
Referenced by
Bajcz, A.W., Glisson, W.J., Doser, J.W. et al. A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring. Sci Rep 14, 2644 (2024).
https://doi.org/10.1038/s41598-024-52608-0
https://doi.org/10.1038/s41598-024-52608-0
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Minnesota Aquatic Invasive Species Research Center
Minnesota Environmental and Natural Resources Trust Fund
Legislative-Citizen Commission on Minnesota Resources
Minnesota Agricultural Experimental Station
Minnesota Environmental and Natural Resources Trust Fund
Legislative-Citizen Commission on Minnesota Resources
Minnesota Agricultural Experimental Station
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Suggested citation
Bajcz, Alex W; Glisson, Wesley; Larkin, Daniel J; Fieberg, John. (2022). R Code, Data, and Output Supporting: A within-lake occupancy model for starry stonewort, Nitellopsis obtusa, to support early detection and monitoring. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/bc08-rf86.
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readme.txt
Description of the code and data
(16.77 KB)
SSW SODM Data Cleaning and Processing Final.Rmd
Raw Data Cleaning and Processing File
(77.52 KB)
spOcc.R
R script performing Bayesian Occupancy-Detection model processing
(16.38 KB)
spOccEXP1.R
R script performing Bayesian Occupancy-Detection model processing
(9.02 KB)
spOccEXP2.R
R script performing Bayesian Occupancy-Detection model processing
(8.88 KB)
spOccEXP3.R
R script performing Bayesian Occupancy-Detection model processing
(8.64 KB)
Outputs.zip
Outputs of the Bayesian Occupancy-Detection model R scripts
(681.52 KB)
Table 1 and other Methods and Results data.R
R script summarizing the data and model results
(4.28 KB)
Heat maps of occupancy probabilities and presence-absence maps.R
R script generating map figures
(56.84 KB)
Maps.zip
Maps generated by the "Heat maps of occupancy probabilities and presence-absence maps.R" script
(24.16 MB)
psi_samplesYR8.rds
Final model results
(775.13 MB)
ssw_data_final.csv
Processed Survey Data
(10.34 MB)
ssw_data_final.rds
R Data File of Processed Survey Data
(720.31 KB)
svBt_pi_5-12-2022.csv
Raw Point Intercept Aquatic Plant Survey Data
(9.98 MB)
dnr_hydro_features_all.zip
Shapefile polygon features for Minnesota's waterbodies
(109.5 MB)
wiscoNoZ_wgs84.zip
Shapefile polygon features for Wisconsin's waterbodies
(64.27 MB)
access1.2.csv
CSV of Minnesota accesses (Input data)
(880.39 KB)
Public_Boat_Access_Sites.zip
Shapefile of Wisconsin accesses (Input Data)
(206.24 KB)
publicAccesses_WI_10May2022.zip
Shapefile of public accesses on focal lakes or adjoined waterbodies in Wisconsin
(2.59 KB)
publicAccesses_MN_10May2022.zip
Shapefile of public accesses on focal lakes or adjoined waterbodies in Minnesota
(2.34 KB)
privateAccesses_WI_10May2022.zip
Shapefile of private accesses on focal lakes or adjoined waterbodies in Wisconsin
(3.98 KB)
privateAccesses_MN_10May2022.zip
Shapefile of private accesses on focal lakes or adjoined waterbodies in Minnesota
(2.66 KB)
WI_accesses_local.rds
R Data File of Wisconsin Boat Accesses
(2.18 KB)
MN_accesses_local.rds
R Data File of Minnesota Boat Accesses
(1.42 KB)
WI_lakes_local.rds
R Data File of Wisconsin Lakes
(120.02 KB)
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