Complete data and code to generate datasets in: Occurrence and environmental data for aquatic plants of Minnesota from 1999-2018
2024-07-15
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1999
2018
2018
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2024-07-12
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Title
Complete data and code to generate datasets in: Occurrence and environmental data for aquatic plants of Minnesota from 1999-2018
Published Date
2024-07-15
Authors
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Verhoeven, Michael
michael.verhoeven.mrv@gmail.com
michael.verhoeven.mrv@gmail.com
Type
Dataset
Observational Data
Statistical Computing Software Code
Observational Data
Statistical Computing Software Code
Abstract
A dataset (and multi-scale aggregations thereof) of point-level occurrences, relative abundances, and associated environmental data for macrophytes (freshwater plants) across Minnesota. The data encompass 3,194 surveys of 1,520 lakes and ponds performed over a 19-year timespan. A total of 372,091 points were sampled, across which 231 taxa were recorded. Macrophyte occurrence data and depth, as well as point-level relative-plant-abundance measures for a subset of surveys, were collated, cleaned, and joined to geospatial data and Secchi-depth measurements of water clarity, enabling light availability, a primary control on aquatic plant growth, to be estimated.
Description
This repository contains the code and input output data needed to generate the datasets (also included here as output data) presented in the companion manuscript. An .html format report is included which show the detailed process that was followed to generate the dataset but does not require a user to run R scripts to view.
Referenced by
Michael R. Verhoeven, William L. Bartodziej, Matthew S. Berg, Simba Blood, Rachael Crabb, Eric Fieldseth, James A. Johnson, Jimmy Marty, Steve McComas, Raymond M. Newman, Meg Rattei, Jill B. Sweet, Justin Townsend, Brian Vlach, Justin Valenty, Jerry P. Spetzman, Susanna W. Witkowski, Andrea Prichard, Minnesota Department of Natural Resources Lake Ecology Unit, Minnesota Department of Natural Resources Invasive Species Program, Minnesota Department of Natural Resources Shallow Lakes Program, Valley Branch Watershed District Board of Managers, Wesley J. Glisson, Daniel J. Larkin. 2024. Occurrence and environmental data for aquatic plants of Minnesota from 1999-2018. [IN REVIEW: Scientific Data].
Related to
Replaces
2024-11-01: Dataset was versioned to reflect a fixed bug in the code. Readme file, code files, and surveys_aqplants.csv were updated from previous version. Previous version can be found here: https://hdl.handle.net/11299/264079.1
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Minnesota Environment and Natural Resources Trust Fund as recommended by the Minnesota Aquatic Invasive Species Research Center (MAISRC) and the Legislative-Citizen Commission on Minnesota Resources (LCCMR)
USDA National Institute of Food and Agriculture through the Minnesota Agricultural Experiment Station
Midwestern Aquatic Plant Management Society through the Robert L. Johnson Research Memorial Grant
National Science Foundation Graduate Research Fellowship Program under Grant No. CON-75851, project 00074041. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author and do not necessarily reflect the views of the National Science Foundation
USDA National Institute of Food and Agriculture through the Minnesota Agricultural Experiment Station
Midwestern Aquatic Plant Management Society through the Robert L. Johnson Research Memorial Grant
National Science Foundation Graduate Research Fellowship Program under Grant No. CON-75851, project 00074041. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author and do not necessarily reflect the views of the National Science Foundation
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Suggested citation
Verhoeven, Michael; Larkin, Daniel J.. (2024). Complete data and code to generate datasets in: Occurrence and environmental data for aquatic plants of Minnesota from 1999-2018. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/av1t-c667.
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Readme_MN_Aquatic_Plants_25Oct2024.txt
Readme documentation file
(35.12 KB)
a_MNsynthesis_dataprep.html
Readable version of code and output of a_Mnsynthesis_dataprep.R
(2.41 MB)
a_MNsynthesis_dataprep.R
Script to update and summarize the aquatic taxa observations dataset
(93.86 KB)
data.zip
Datasets used and produced by the analysis script
(34.91 MB)
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