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Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels

Wei, Guanju
Yang, Judy Q
2022-05-09
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Collection period

2021-11-17
2021-03-30

Date completed

2022-04-30

Date updated

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Journal Title

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Volume Title

Title

Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels

Published Date

2022-05-09

Author Contact

Yang, Judy
judyyang@umn.edu

Type

Dataset
Experimental Data
Programming Software Code

Abstract

This dataset consists of the codes, experimental data, and raw images of the Pseudomonas putida biofilm development experiments. They are all collected in the Saint Anthony Falls Laboratory at the University of Minnesota. The codes are used for processing the raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameters and the data after processing. The image file contains the raw images collected using the Nikon confocal microscope.

Description

The images file contains the raw images collected using Nikon confocal microscope. The codes are used for processing these raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameter and the data after processing.

Referenced by

Wei, G., & Yang, J. Q. (2023). Impacts of hydrodynamic conditions and microscale surface roughness on the critical shear stress to develop and thickness of early‐stage Pseudomonas putida biofilms. Biotechnology and Bioengineering.
https://doi.org/10.1002/bit.28409

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Funding information

This study was supported by Judy Yang's startup funds and University of Minnesota's MnDRIVE Environment seed grant.

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Suggested citation

Wei, Guanju; Yang, Judy Q. (2022). Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/afnk-kp31.

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