Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels

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Persistent link to this item

https://doi.org/10.13020/afnk-kp31
https://hdl.handle.net/11299/227295

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Keywords

Biofilm

Microfluidics

Collection period

2021-11-17
2021-03-30

Date completed

2022-04-30

Date updated

Time period coverage

Geographic coverage

Source information

Journal Title

Journal ISSN

Volume Title

Title

Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels

Published Date

2022-05-09

Authors

Wei, Guanju

Yang, Judy

Group

University of Minnesota, Saint Anthony Falls Laboratory, Environmental Transport Lab

Author Contact

Yang, Judy
judyyang@umn.edu

Type

Dataset
Experimental Data
Programming Software Code

Abstract

This dataset consists of the codes, experimental data, and raw images of the Pseudomonas putida biofilm development experiments. They are all collected in the Saint Anthony Falls Laboratory at the University of Minnesota. The codes are used for processing the raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameters and the data after processing. The image file contains the raw images collected using the Nikon confocal microscope.

Description

The images file contains the raw images collected using Nikon confocal microscope. The codes are used for processing these raw images to calculate the biofilm thickness. The experimental data file contains the experiment parameter and the data after processing.

Referenced by

Wei, G., & Yang, J. Q. (2023). Impacts of hydrodynamic conditions and microscale surface roughness on the critical shear stress to develop and thickness of early‐stage Pseudomonas putida biofilms. Biotechnology and Bioengineering.
https://doi.org/10.1002/bit.28409

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License

CC0 1.0 Universal
http://creativecommons.org/publicdomain/zero/1.0/

Publisher

Collections

Data Repository for U of M (DRUM)

Funding information

This study was supported by Judy Yang's startup funds and University of Minnesota's MnDRIVE Environment seed grant.

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Previously Published Citation

Suggested citation

Wei, Guanju; Yang, Judy. (2022). Experimental data of Pseudomonas putida biofilm development experiments in flat and rough microfluidic channels. Retrieved from the University Digital Conservancy, https://doi.org/10.13020/afnk-kp31.

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