Geobacter sulfurreducens inner membrane cytochrome transcriptional and phenotypic data
2021-06-15
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2018-02-02
2019-10-04
2019-10-04
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2020-08-10
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Geobacter sulfurreducens inner membrane cytochrome transcriptional and phenotypic data
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2021-06-15
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Bond, Daniel R
dbond@umn.edu
dbond@umn.edu
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Genomics Data
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Abstract
Geobacter sulfurreducens utilizes extracellular electron acceptors such as Mn(IV), Fe(III), syntrophic partners, and electrodes that vary from +0.4 to −0.3 V vs. Standard Hydrogen Electrode (SHE), representing a potential energy span that should require a highly branched electron transfer chain. Here we describe CbcBA, a bc-type cytochrome essential near the thermodynamic limit of respiration when acetate is the electron donor. Mutants lacking cbcBA ceased Fe(III) reduction at −0.21 V vs. SHE, could not transfer electrons to electrodes between −0.21 and −0.28 V, and could not reduce the final 10% – 35% of Fe(III) minerals. As redox potential decreased during Fe(III) reduction, cbcBA was induced with the aid of the regulator BccR to become one of the most highly expressed genes in G. sulfurreducens. Growth yield (CFU/mM Fe(II)) was 112% of WT in ∆cbcBA, and deletion of cbcL (an unrelated bc-cytochrome essential near −0.15 V) in ΔcbcBA increased yield to 220%. Together with ImcH, which is required at high redox potentials, CbcBA represents a third cytoplasmic membrane oxidoreductase in G. sulfurreducens. This expanding list shows how metal-reducing bacteria may constantly sense redox potential to adjust growth efficiency in changing environments.
Description
The data files include raw data as well as analyzed results for transcriptional analysis of WT G. sulfurreducens and mutant lacking BccR (GSU0598) under fumarate vs iron citrate growth conditions. This dataset also includes the phenotypic data files for experiments associated with this project.
Referenced by
Joshi, K., Chan, C.H. and Bond, D.R. (2021), Geobacter sulfurreducens inner membrane cytochrome CbcBA controls electron transfer and growth yield near the energetic limit of respiration. Molecular Microbiology. Accepted Author Manuscript. 10.1111/mmi.14801
https://doi.org/10.1101/2021.04.15.440034
https://doi.org/10.1101/2021.04.15.440034
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Office of Naval Research: N00014-16-1-2194, and N00014-18-1-2632.
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Joshi, Komal; Chan, Chi Ho; Bond, Daniel R. (2021). Geobacter sulfurreducens inner membrane cytochrome transcriptional and phenotypic data. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/5AMD-ZW33.
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