Data for Diffusion of knots in nanochannel-confined DNA molecules

Mao, Runfang
Dorfman, Kevin D
2023-05-04
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https://doi.org/10.13020/j1rp-kr98
 https://hdl.handle.net/11299/253958
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Data for Diffusion of knots in nanochannel-confined DNA molecules

Published Date

2023-05-04

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Dorfman Research Group - University of Minnesota Department of Chemical Engineering and Materials Science

Author Contact

Dorfman, Kevin D
dorfman@umn.edu

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Dataset
Simulation Data

Abstract

This data set contains the input and output files from the simulation in " Diffusion of knots in nanochannel-confined DNA molecules." Langevin dynamics simulations were used to investigate the knot diffusion behavior in the nanochannel confined DNA molecules. With this dataset, users should be able to regenerate all the figures that appeared in the paper.

Description

With the data provided here, users can reproduce all the figures presented in the associated paper. The data set is split into the subdirectories 'figure#' corresponding to each figure in the main paper. Each folder contains input files and output of Langevin dynamics simulations for the corresponding figures in the paper. For a detailed description of the data files, please read the readme file.

Referenced by

Mao, R., & Dorfman, K. (2023). Diffusion of knots in nanochannel-confined DNA molecules. Journal of Chemical Physics. 158 (19).
https://doi.org/10.1063/5.0151025

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CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)
Dorfman Group Research Data

Funding information

This work was supported by National Science Foundation through award CBET-2016879. Computational resources were provided by the Minnesota Supercomputing Institute.

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Mao, Runfang; Dorfman, Kevin D. (2023). Data for Diffusion of knots in nanochannel-confined DNA molecules. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/j1rp-kr98.

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Diffusion_of_knot.zip
Input and output data for LAMMPS simulation and characterizing diffusion of knotted DNA in confinement
(122.34 MB)

README.txt
Description of dataset
(5.89 KB)

Content distributed via the University Digital Conservancy may be subject to additional license and use restrictions applied by the depositor. By using these files, users agree to the Terms of Use. Materials in the UDC may contain content that is disturbing and/or harmful. For more information, please see our statement on harmful content in digital repositories.