Maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design

Springer, Nathan M
Li, Qing
Crisp, Peter A
2017-12-13
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https://doi.org/10.13020/D69X0H
 https://hdl.handle.net/11299/191885
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2017-01-01
2017-11-31

Date Completed

2017-12-01

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Title

Maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design

Published Date

2017-12-13

Authors

Group

Springer Lab

Author Contact

Crisp, Peter A
pcrisp@umn.edu

Type

Dataset
Genomics Data

Abstract

Table detailing the design and genomic coordinates (v2 and v4) for the maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design for profiling of the maize methylome. Released to accompany our publication on DNA methylation changes induced by tissue culture (Han et al 2017) as a supporting supplemental methods file.

Description

Maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design. Contained in the dataset are descriptions of the "target” regions, which are the bait regions corresponding to the sequence capture probes. Also contained are the coordinates of the target region in the B73 v4 maize genome build (Jiao et al. 2017); the strand orientation of the target; the original “target” probe capture region for the maize v2 genome build. This submission also describes the “specific” regions of interest within the captured “target” bait regions; the coordinates of the specific region in the B73 v4 maize genome build (Jiao et al. 2017); and the original “specific” region of interest for the maize v2 genome build.

Referenced by

Han, Z., Crisp, P.A., Stelpflug, S., Kaeppler, S.M., Li, Q., Springer, N.M. (2018). Targeted epigenomic changes to the maize methylome resulting from tissue culture [Preprint]. bioRxiv.
http://dx.doi.org/10.1101/242081

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Attribution-ShareAlike 3.0 United States
http://creativecommons.org/licenses/by-sa/3.0/us/

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Data Repository for U of M (DRUM)

Funding Information

National Science Foundation (IOS-1237931) to NMS

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Suggested Citation

Springer, Nathan M; Li, Qing; Crisp, Peter A. (2017). Maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/D69X0H.

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