16S RNA data for biofilm in contact with antimicrobial peptide coatings

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Persistent link to this item

https://doi.org/10.13020/3dh2-xh66
https://hdl.handle.net/11299/212649

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Keywords

antimicrobial peptides

Coatings

Hydroxyapatite

16S RNA

Oral plaque

GL13K

1018

DJK2

Collection period

2017
2017

Date completed

2017

Date updated

Time period coverage

Geographic coverage

Source information

Journal Title

Journal ISSN

Volume Title

Title

16S RNA data for biofilm in contact with antimicrobial peptide coatings

Published Date

2020-04-23

Authors

Aparicio, Conrado

Moussa, Dina G.

Group

Minnesota Dental Research Center for Biomaterials and Biomechanics

Author Contact

Aparicio, Conrado
apari003@umn.edu

Type

Dataset
Genomics Data

Abstract

Dual-indexed 16S rRNA gene amplicon sequencing using the V3-V4 region on the Illumina MiSeq platform 300PE for triplicate samples of biofilm from stocks of oral plaque sample grown on hydroxyapaptite discs without (CTRL) and with antimicrobial peptide (1018, DJK2, D-GL13K) coatings, treated and non-treated with PMA. This data was collected as part of the NIDCR funded project R01-DE to determine the effects of antimicrobial peptides in the microbiome of biofilms from oral plaque stocks to prevent degradation of dental restorations. The data was generated at the University of Minnesota Genomics Center and analyzed at the University of Minnesota Informatics Institute. The data is released to be of public access following submission of a manuscript presenting and analyzing this data.

Description

.html files and other associated files for the analysis of the Ilumina data .txt files with log information for each file/sample .xls file with analysis .txt file with bacteria sequences used for analysis

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License

CC0 1.0 Universal
http://creativecommons.org/publicdomain/zero/1.0/

Publisher

Collections

Data Repository for U of M (DRUM)

Funding information

National Insitute of Dental and Craniofacial Research

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Previously Published Citation

Suggested citation

Aparicio, Conrado; Moussa, Dina G.. (2020). 16S RNA data for biofilm in contact with antimicrobial peptide coatings. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/3dh2-xh66.

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