16S RNA data for biofilm in contact with antimicrobial peptide coatings

Aparicio, Conrado
Moussa, Dina G.
2020-04-23
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https://doi.org/10.13020/3dh2-xh66
 https://hdl.handle.net/11299/212649
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2017
2017

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2017

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Title

16S RNA data for biofilm in contact with antimicrobial peptide coatings

Published Date

2020-04-23

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Minnesota Dental Research Center for Biomaterials and Biomechanics

Author Contact

Aparicio, Conrado
apari003@umn.edu

Type

Dataset
Genomics Data

Abstract

Dual-indexed 16S rRNA gene amplicon sequencing using the V3-V4 region on the Illumina MiSeq platform 300PE for triplicate samples of biofilm from stocks of oral plaque sample grown on hydroxyapaptite discs without (CTRL) and with antimicrobial peptide (1018, DJK2, D-GL13K) coatings, treated and non-treated with PMA. This data was collected as part of the NIDCR funded project R01-DE to determine the effects of antimicrobial peptides in the microbiome of biofilms from oral plaque stocks to prevent degradation of dental restorations. The data was generated at the University of Minnesota Genomics Center and analyzed at the University of Minnesota Informatics Institute. The data is released to be of public access following submission of a manuscript presenting and analyzing this data.

Description

.html files and other associated files for the analysis of the Ilumina data .txt files with log information for each file/sample .xls file with analysis .txt file with bacteria sequences used for analysis

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CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)

Funding information

National Insitute of Dental and Craniofacial Research

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Aparicio, Conrado; Moussa, Dina G.. (2020). 16S RNA data for biofilm in contact with antimicrobial peptide coatings. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/3dh2-xh66.

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