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Data for DNA fragmentation in a steady shear flow

Qiao, Yiming
Ma, Zixue
Onyango, Clive
Cheng, Xiang
Dorfman, Kevin D
2022-09-23
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Persistent link to this item

https://doi.org/10.13020/tsva-hn81
 https://hdl.handle.net/11299/241685
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Collection period

2021-05-31
2022-08-31

Date completed

2022-08-31

Date updated

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Title

Data for DNA fragmentation in a steady shear flow

Published Date

2022-09-23

Authors

Group

University of Minnesota Dorfman Research Lab

Author Contact

Qiao, Yiming
qiao0017@umn.edu

Type

Dataset
Experimental Data
Programming Software Code

Abstract

We have determined the susceptibility of T4 DNA (166 kilobase pairs, kbp) to fragmentation under steady shear in a cone-and-plate rheometer.

Description

The data includes Pulsed-field gel electrophoresis (PFGE) images and all the data used to generate the figures in the article.

Referenced by

Qiao, Yiming; Ma, Zixue; Onyango, Clive; Cheng, Xiang; Dorfman, Kevin D. (2022). DNA fragmentation in a steady shear flow. Biomicrofluidics.
https://doi.org/10.1063/5.0109361

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License

CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

Publisher

Collections

Data Repository for U of M (DRUM)

Funding information

NIH R21-HG011251

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Suggested citation

Qiao, Yiming; Ma, Zixue; Onyango, Clive; Cheng, Xiang; Dorfman, Kevin D. (2022). Data for DNA fragmentation in a steady shear flow. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/tsva-hn81.

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Description
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Image_Analysis.zip
MATLAB codes to process the PFGE data
(7.02 KB)

Figure_Data.zip
Raw PFGE images and the corresponding data sets
(19.77 MB)

Automate_Python.zip
Example of how to use Python to extract information from the excel files in the folders in Figure_Data.zip
(398.07 KB)

README.txt
Description of data
(6.97 KB)

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