Epidemiological Model and Weighted Edgelists of Contacts Among Cattle Herds in the Dry and Wet Season in Central Kenya

VanderWaal, Kimberly
Gilbertson, Marie
Okanga, Sharon
Allan, Brian F.
Craft, Meggan E.
2017-07-13
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Persistent link to this item

https://doi.org/10.13020/D60D42
 https://hdl.handle.net/11299/188752
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Collection period

2015-02-01
2015-06-30

Date completed

2017-07-01

Date updated

Time period coverage

2015

Geographic coverage

Ol Pejeta Conservancy, Laikipia County, Kenya

Source information

Journal Title

Journal ISSN

Volume Title

Title

Epidemiological Model and Weighted Edgelists of Contacts Among Cattle Herds in the Dry and Wet Season in Central Kenya

Published Date

2017-07-13

Authors

Group

Author Contact

VanderWaal, Kimberly
kvw@umn.edu

Type

Dataset
Field Study Data
Statistical Computing Software Code

Abstract

This data consists of weighted edgelists representing the frequency with which mobile herds of cattle came into contact with one another in central Kenya. In addition, code is included that simulates the spread of a pathogen through the cattle network. This data can be used to better understand patterns of contact among cattle herds and its implication for the spread of pathogens.

Description

The edgelists can be used to simulate disease spread in the wet or dry season using the modeling code in OPC_cattle_model_DRUM.R. A dynamic edgelist (edges.dynamic.dry.csv or edges.dynamic.wet.csv) should be read into the modeling code as part of the read.csv(file.choose()) function. The code should be run in entirety to load the function Net.model(). Then run Net.model() to produce the output. See the Readme.txt file for more details.

Referenced by

VanderWaal et al. (2017). “Seasonality and pathogen transmission in pastoral cattle contact networks.”
https://doi.org/10.1098/rsos.170808

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License

CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

Publisher

Collections

Data Repository for U of M (DRUM)

Funding information

This project was funded by NSF Grant CNH-1313822 to B.F.A.; M.G. was funded by the University of Minnesota Veterinary Summer Scholars program; M.E.C. was funded by National Science Foundation (DEB-1413925) and the University of Minnesota’s Office of the Vice President for Research and Academic Health Center Seed Grant.

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Suggested citation

VanderWaal, Kimberly; Gilbertson, Marie; Okanga, Sharon; Allan, Brian F.; Craft, Meggan E.. (2017). Epidemiological Model and Weighted Edgelists of Contacts Among Cattle Herds in the Dry and Wet Season in Central Kenya. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/D60D42.

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Description
Size
edgelist.static.pardry.csv
Static edgelist representing contacts among cattle herds in the dry season
(2.04 KB)

edgelist.static.wet.csv
Static edgelist representing contacts among cattle herds in the wet season
(1.53 KB)

edges.dynamic.dry.csv
Dynamic edgelist representing contacts by day among cattle herds in the dry season
(9.44 KB)

edges.dynamic.wet.csv
Dynamic edgelist representing contacts by day among cattle herds in the wet season
(8.66 KB)

OPC_cattle_model_DRUM.R
R code for running transmission model on cattle herd contact network
(5.07 KB)

Readme.txt
Readme describing data and R codes
(10.1 KB)

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