Data for: Diffusion of knotted DNA molecules in nanochannels in the extended de Gennes regime

Ma, Zixue
Dorfman, Kevin D
2021-04-19
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Persistent link to this item

https://doi.org/10.13020/572c-t229
 https://hdl.handle.net/11299/219381
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Collection period

2020-05
2020-12

Date completed

2021-01

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Title

Data for: Diffusion of knotted DNA molecules in nanochannels in the extended de Gennes regime

Published Date

2021-04-19

Authors

Group

University of Minnesota Dorfman Research Lab

Author Contact

Ma, Zixue
ma000052@umn.edu

Type

Dataset
Experimental Data
Programming Software Code

Abstract

We study the effect of knots on DNA diffusion in nanochannels using a nanofluidic "knot factory" device for knot generation. The unknotted and knotted DNA diffusion data for the article is published as "Diffusion of knotted DNA molecules in nanochannels in the extended de Gennes regime" in Macromolecules. The data includes DNA images before and after knot generation and all the data used to generate the figures in the article.

Description

MATLAB codes, figure data, DNA images

Referenced by

Zixue Ma and Kevin D. Dorfman. (2021). Diffusion of knotted DNA molecules in nanochannels in the extended de Gennes regime. Macromolecules.
https://doi.org/10.1021/acs.macromol.1c00143

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License

CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

Publisher

Collections

Data Repository for U of M (DRUM)
Dorfman Group Research Data

Funding information

Sponsorship: NSF (CBET-2016879)

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Suggested citation

Ma, Zixue; Dorfman, Kevin D. (2021). Data for: Diffusion of knotted DNA molecules in nanochannels in the extended de Gennes regime. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/572c-t229.

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Description
Size
Readme.txt
Documentation of the Data and MATLAB codes
(5.45 KB)

Figure_Data.zip
Data and MATLAB codes used to generate figures (17 files)
(8.73 MB)

Image_Analysis.zip
MATLAB codes for DNA image analysis
(52.42 KB)

Videos.zip
DNA images (36 .TIF files)
(22.65 GB)

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