Whole Genome Imputation Panel of 624 Dogs

Friedenberg, Steven
Clark, Leigh Anne
Murphy, Sarah
Greif, Elizabeth
Evans, Jacquelyn
Tsai, Kate
2023-03-09
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https://doi.org/10.13020/GKXV-GT86
 https://hdl.handle.net/11299/252998
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2017
2022

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Title

Whole Genome Imputation Panel of 624 Dogs

Published Date

2023-03-09

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Friedenberg, Steven
fried255@umn.edu

Type

Dataset
Genomics Data

Abstract

This dataset contains a compressed variant call file (VCF) and index file of phased, bi-allelic, single nucleotide variants (SNVs) from 624 dogs of various breeds that were used as a reference panel for imputation of low-pass whole-genome sequencing from 83 Great Danes. Also included is an Excel file containing breed information for each of the 624 dogs. The file contains data for all 38 canine autosomes and the X chromosome.

Description

Referenced by

Bell, Sarah M, Evans, Jacquelyn M, Greif, Elizabeth A, Tsai, Kate L, Friedenberg, Steven G, Clark, Leigh Anne. 2023. GWAS using low-pass whole genome sequence reveals a novel locus in canine congenital idiopathic megaesophagus. Mamm Genome. 34(3): 464-472.
https://doi.org/10.1007/s00335-023-09991-2

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CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)

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Suggested citation

Friedenberg, Steven; Clark, Leigh Anne; Murphy, Sarah; Greif, Elizabeth; Evans, Jacquelyn; Tsai, Kate. (2023). Whole Genome Imputation Panel of 624 Dogs. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/GKXV-GT86.

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Description
Size
imputation_panel_metadata.xlsx
metadata
(21.18 KB)

joint_genotype.canfam3.snps.phased.vcf.gz.tbi
VCF index file
(1.76 MB)

joint_genotype.canfam3.snps.phased.vcf.gz
VCF
(1.61 GB)

Archival_data_CSV.zip
Archival data (CSV format)
(13.41 KB)

Readme_Friedenberg_2023.txt
Description of the data
(3.65 KB)

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