Whole Genome Imputation Panel of 624 Dogs
2023-03-09
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Whole Genome Imputation Panel of 624 Dogs
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2023-03-09
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Friedenberg, Steven
fried255@umn.edu
fried255@umn.edu
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Dataset
Genomics Data
Genomics Data
Abstract
This dataset contains a compressed variant call file (VCF) and index file of phased, bi-allelic, single nucleotide variants (SNVs) from 624 dogs of various breeds that were used as a reference panel for imputation of low-pass whole-genome sequencing from 83 Great Danes. Also included is an Excel file containing breed information for each of the 624 dogs. The file contains data for all 38 canine autosomes and the X chromosome.
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Referenced by
Bell, Sarah M, Evans, Jacquelyn M, Greif, Elizabeth A, Tsai, Kate L, Friedenberg, Steven G, Clark, Leigh Anne. 2023. GWAS using low-pass whole genome sequence reveals a novel locus in canine congenital idiopathic megaesophagus. Mamm Genome. 34(3): 464-472.
https://doi.org/10.1007/s00335-023-09991-2
https://doi.org/10.1007/s00335-023-09991-2
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Friedenberg, Steven; Clark, Leigh Anne; Murphy, Sarah; Greif, Elizabeth; Evans, Jacquelyn; Tsai, Kate. (2023). Whole Genome Imputation Panel of 624 Dogs. Retrieved from the University Digital Conservancy, https://doi.org/10.13020/GKXV-GT86.
View/Download file
| File View/Open | Description | Size |
|---|---|---|
| imputation_panel_metadata.xlsx | metadata | 21.18 KB |
| joint_genotype.canfam3.snps.phased.vcf.gz.tbi | VCF index file | 1.76 MB |
| joint_genotype.canfam3.snps.phased.vcf.gz | VCF | 1.61 GB |
| Archival_data_CSV.zip | Archival data (CSV format) | 13.41 KB |
| Readme_Friedenberg_2023.txt | Description of the data | 3.65 KB |
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