Data, Model Documentation, and Output Supporting "Optimizing syndromic health surveillance in free ranging great apes: the case of Gombe National Park"
2018-05-24
Loading...
Persistent link to this item
Statistics
View StatisticsCollection period
Date completed
Date updated
Time period coverage
Geographic coverage
Source information
Journal Title
Journal ISSN
Volume Title
Title
Data, Model Documentation, and Output Supporting "Optimizing syndromic health surveillance in free ranging great apes: the case of Gombe National Park"
Published Date
2018-05-24
Group
Author Contact
Wolf, Tiffany M
wolfx305@umn.edu
wolfx305@umn.edu
Type
Dataset
Field Study Data
Observational Data
Programming Software Code
Simulation Data
Field Study Data
Observational Data
Programming Software Code
Simulation Data
Abstract
Syndromic surveillance is an incipient approach to early wildlife disease detection. Consequently, systematic assessments are needed for methodology validation in wildlife populations. We evaluated the sensitivity of a syndromic surveillance protocol for respiratory disease detection among chimpanzees in Gombe National Park, Tanzania. Empirical health, behavioral and demographic data were integrated with an agent-based, network model to simulate disease transmission and surveillance. Surveillance sensitivity was estimated as 66% (95% Confidence Interval: 63.1, 68.8%) and 59.5% (95% Confidence Interval: 56.5%, 62.4%) for two monitoring methods (weekly count and prevalence thresholds, respectively), but differences among calendar quarters in outbreak size and surveillance sensitivity suggest seasonal effects. We determined that a threshold weekly detection of ≥2 chimpanzees with clinical respiratory disease leading to outbreak response protocols (enhanced observation and biological sampling) is an optimal algorithm for outbreak detection in this population.
Synthesis and applications: This is the first quantitative assessment of syndromic surveillance in wildlife, providing a model approach addressing disease emergence. Coupling syndromic surveillance with targeted diagnostic sampling in the midst of suspected outbreaks will provide a powerful system for detecting disease transmission and understanding population impacts.
Description
Data files include documentation of a disease simulation model, simulation data produced from the model, as well as input data used to parameterize the model.
Referenced by
Related to
Replaces
item.page.isreplacedby
Publisher
Funding information
Funding support for collection and analysis of syndromic surveillance data comes from the National Institute of Health (R01 AI058715, R01 AI120810 and R00 HD057992), National Science Foundation (LTREB-1052693), Arcus Foundation, USFWS Great Ape Conservation Fund, Morris Animal Foundation (D10ZO-902), University of Minnesota Consortium on Law and Values in Health, Environment, and the Life Sciences, University of Minnesota Doctoral Dissertation Fellowship and Lincoln Park Zoo.
item.page.sponsorshipfunderid
item.page.sponsorshipfundingagency
item.page.sponsorshipgrant
Previously Published Citation
Other identifiers
Suggested citation
Wolf, Tiffany, M; Wang, Wenchun, A; Lonsdorf, Elizabeth V; Gillespie, Thomas; Pusey, Anne; Gilby, Ian; Travis, Dominic A; Singer, Randall. (2018). Data, Model Documentation, and Output Supporting "Optimizing syndromic health surveillance in free ranging great apes: the case of Gombe National Park". Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/D64X2Q.
View/Download File
File View/Open
Description
Size
Readmetxt.txt
Readmetxt.txt
(14.42 KB)
Chimpanzee_Respiratory_Disease_Simulation_Model_2.3.2015_Documentation.pdf
Chimpanzee_Respiratory_Disease_Simulation_Model_2.3.2015_Documentation.pdf
(6.27 MB)
PopulationNetworkModelInputs_Anon.xlsx
PopulationNetworkModelInputs_Anon.csv
(198.85 KB)
ScenarioAnalysis1_Q3surveillanceRatesAggregatedByAgeclass_Anon.xlsx
Scenario Analysis 1 Q3 surveillance Rates Aggregated By Ageclass Anon
(60.19 KB)
ScenarioAnalysis2_Q32005_Anon.xlsx
Scenario Analysis 2 Q3 2005 Anon
(51.53 KB)
ScenarioAnalysis2_Q32006_Anon.xlsx
Scenario Analysis 2 Q3 2006 Anon
(55.58 KB)
ScenarioAnalysis2_Q32008_Anon.xlsx
Scenario Analysis 2 Q3 2008 Anon
(52.91 KB)
ScenarioAnalysis2_Q32009_Anon.xlsx
Scenario Analysis 2 Q3 2009 Anon
(55.61 KB)
ScenarioAnalysis2_Q32010_Anon.xlsx
Scenario Analysis 2 Q3 2010 Anon
(51.29 KB)
ScenarioAnalysis2_Q32011_Anon.xlsx
Scenario Analysis 2 Q3 2011 Anon
(54.35 KB)
ScenarioAnalysis2_Q32012_Anon.xlsx
Scenario Analysis 2 Q3 2012 Anon
(52.79 KB)
ScenarioAnalysis3_Q3APDetectIncreased_Anon.xlsx
Scenario Analysis 3 Q3 AP Detect Increased Anon
(64.51 KB)
SyndromicSurveillanceModelOutput.xlsx
Syndromic Surveillance Model Output
(1.06 MB)
ScenarioAnalyses_ArchivalCopies.zip
Archive Version of the Excel Format (.csv file)
(2.01 MB)
Content distributed via the University Digital Conservancy may be subject to additional license and use restrictions applied by the depositor. By using these files, users agree to the Terms of Use. Materials in the UDC may contain content that is disturbing and/or harmful. For more information, please see our statement on harmful content in digital repositories.