R Code and Output Supporting "Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation"

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R Code and Output Supporting "Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation"

Published Date

2019-07-22

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Fieberg, John R
Jfieberg@umn.edu

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Dataset

Abstract

This repository contains data and R code (along with associated output from running the code) for fitting resource-selection functions and step-selection functions with random effects, supporting all results reported in: Muff, S., Signer, J. and Fieberg, J., 2018. Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation. bioRxiv, p.411801.

Description

See readme.txt for a description of the files in this repository.

Referenced by

Muff, S., Signer, J. and Fieberg, J., 2018. Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation. bioRxiv, p.411801.
LaPoint, S., Gallery, P., Wikelski, M. & Kays, R. (2013). Animal behavior, cost-based corridor models, and real corridors. Landscape Ecology, 28, 1615-1630
Lele, S.R., Keim, J L., and P. Solymos (2017). ResourceSelection: Resource Selection (Probability) Functions for Use-Availability Data. R package version 0.3-2. https://CRAN.R-project.org/package=ResourceSelection
Weinberger, I. C., S. Muff, A. Kranz, and F. Bontadina (2016). Flexible habitat selection paves the way for a recovery of otter populations in the European Alps. Biological Conservation 199, 88-95.

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The current version replaces version 1:
https://hdl.handle.net/11299/204737.1

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Suggested citation

Muff, Stefanie; Signer, Johannes; Fieberg, John R. (2019). R Code and Output Supporting "Accounting for individual-specific variation in habitat-selection studies: Efficient estimation of mixed-effects models using Bayesian or frequentist computation". Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/8bhv-dz98.
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File View/OpenDescriptionSize
readme.txtDescription of files6.93 KB
d_otter.csvOtter data1.27 MB
fisher_data.csvFisher data918.79 KB
Goats_RSF.RR code for fitting RSFs to goat data6.14 KB
Goats_RSF.htmlOutput from running Goats_RSF.R735.67 KB
Otters_SSF.rR code for fitting RSFs to otter data9.96 KB
Otters_SSF.htmlOutput from running Otters_SSF.R640.36 KB
inla_emarginal.RFunction called in Otters_SSF.R673 B
inla_mmarginal.RFunction called in Otters_SSF.R653 B
fisher_rsf_and_ssf.RR code for fitting RSFs and SSFs to fisher data10.57 KB
fisher_rsf_and_ssf.htmlOutput from running fisher_rsf_and_ssf.R743.26 KB
fisher_ssf_stan.R2.33 KB
fisher_ssf_stan.html918.7 KB
landuse_study_area.tifLandcover data used in fisher_rsf_and_ssf.R1.92 MB
ssf_simulations_v17.RCode for conducting simulations10.13 KB

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