Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies

Loading...
Thumbnail Image
Statistics
View Statistics

Collection period

2015-07-08
2017-01-18

Date completed

2022-05-25

Date updated

Time period coverage

Geographic coverage

Source information

Journal Title

Journal ISSN

Volume Title

Title

Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies

Published Date

2022-07-18

Group

Author Contact

Jankowski, Mark
jankowski.mark@epa.gov

Type

Dataset
Experimental Data
Genomics Data

Abstract

A major challenge in ecotoxicology is accurately and sufficiently measuring chemical exposures and biological effects given the presence of complex and dynamic contaminant mixtures in surface waters. Our study examined the performance of the Daphnia magna transcriptome to detect distinct responses across three water sources in Minnesota: laboratory [well] waters, wetland waters, or stormwaters. Pyriproxyfen (PPF) was included as a gene expression and male neonate production positive control to examine whether gene expression resulting from exposure to this well-studied juvenoid hormone analog can be detected in complex matrices. Laboratory-reared (<24 hr) D. magna were exposed to a water source and/or PPF for 16 d to monitor phenotypic changes or 96 hr to examine gene expression responses using Illumina HiSeq 2500 (10 million reads per library, 50-bp paired-end (2x50)).

Description

Data herein are associated with figures and tables in DOI 10.1002/etc.5392. Raw and processed RNA sequencing data can be found in NCBI GEO (https://www.ncbi.nlm.nih.gov/geo/). R code used to analyze the data can be found in GitHub (https://github.com/jankow55/Daphnia-bioassay.git).

Referenced by

Jankowski, M. D., Fairbairn, D. J., Baller, J. A., Westerhoff, B. M., & Schoenfuss, H. L. (2022). Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies. Environmental Toxicology and Chemistry, 41(9), 2107-2123. https://doi.org/10.1002/etc.5392

Replaces

item.page.isreplacedby

Publisher

Funding information

U.S. Environmental Protection Agency: Clean Water Act Section 106 Monitoring Funds
State of Minnesota: Clean Water Fund of Minnesota's Clean Water and Land

item.page.sponsorshipfunderid

item.page.sponsorshipfundingagency

item.page.sponsorshipgrant

Previously Published Citation

Other identifiers

Suggested citation

Jankowski, Mark D; Fairbairn, David J; Baller, Joshua A; Westerhoff, Benjamin M; Schoenfuss, Heiko L. (2022). Data for: Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/4hq3-v890.

Content distributed via the University Digital Conservancy may be subject to additional license and use restrictions applied by the depositor. By using these files, users agree to the Terms of Use. Materials in the UDC may contain content that is disturbing and/or harmful. For more information, please see our statement on harmful content in digital repositories.