16S Intestinal Microbiome Sequences of Rhesus Macaques Treated with Chronic Morphine for 92 Days, SIV for 21 Days, or in Combination (Morphine for 70 Days then SIV+Morphine for 21 Days)

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2013-06-04
2013-09-09

Date completed

2014-08-11

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16S Intestinal Microbiome Sequences of Rhesus Macaques Treated with Chronic Morphine for 92 Days, SIV for 21 Days, or in Combination (Morphine for 70 Days then SIV+Morphine for 21 Days)

Published Date

2017-04-10

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Author Contact

Sindberg, Gregory M
sind0017@umn.edu

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Dataset
Genomics Data

Abstract

Rhesus Macaque fecal matter was sequenced at different intervals after receiving Morphine I.V., SIV infection, or in sequence. The intervals are as follows: Morphine for 92 days, SIV for 21 days, or a sequence of morphine for 70 days then SIV+Morphine for 21 days. This was used to look for microbial and metabolic changes due to the treatments.

Description

The dataset contains 78 FASTQ files which are 16S V4 region sequences from with the file names indicating the following information: Mo104 indicates the experiment number as was defined by our collaborators at University of Nebraska - Omaha; ##### (i.e. 39909) indicates the Rhesus Macaque animal number that was assigned; 09112013 indicates MonthDayYear that each sample was collected; S## (i.e. S70) is an internal number assigned by the UMGC sequencing core to each sequence; L0001 = an internal number assigned by UMGC; R1 = Read 1, as assigned by the UMGC sequencing core; 001 = an internal number assigned by UMGC. This information is also contained in the metadata txt file.

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NIDA (NIH)

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Suggested citation

Sindberg, Gregory M; Roy, Sabita. (2017). 16S Intestinal Microbiome Sequences of Rhesus Macaques Treated with Chronic Morphine for 92 Days, SIV for 21 Days, or in Combination (Morphine for 70 Days then SIV+Morphine for 21 Days). Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/D6GC76.
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File View/OpenDescriptionSize
Mo104_V4_16s.zip16S V4 sequencing files257.44 MB
Mo104_metadata.txtMetadata15.55 KB

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