Wetland bird case study for application of habitat association models across Great Lakes and Prairie Pothole regions
2022-12-08
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Title
Wetland bird case study for application of habitat association models across Great Lakes and Prairie Pothole regions
Published Date
2022-12-08
Author Contact
Elliott, Lisa H
harnx012@umn.edu
harnx012@umn.edu
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Field Study Data
Statistical Computing Software Code
Field Study Data
Statistical Computing Software Code
Abstract
Species often exhibit regionally specific habitat associations, and, thus, habitat association models developed in one region might not be accurate or even appropriate for other regions. Three programs to survey wetland-breeding birds covering (respectively) North American wetland breeding bird survey programs in Great Lakes coastal wetlands, inland Great Lakes wetlands, and the Prairie Pothole Region offer an opportunity to test whether regionally specific models of habitat use by wetland-obligate breeding birds are transferrable across regions. This dataset includes wetland bird point count and habitat characteristics data from the Great Lakes Coastal Wetland Monitoring Program (2016-2017) and Great Lakes Marsh Monitoring Program (1995-1997 and 2016-2017). These data are then combined with publicly available data from the Dakotas Wetland Survey (1995-1997). The included code files cover the creation and selection of habitat association models, and test the transferability of these models across datasets. These data are now released to accompany publication of "Application of habitat association models across regions: useful explanatory power retained in wetland bird case study."
Description
GL_Data.csv: point count data for Pied-billed Grebe, Virginia Rail, Sora, and American Bittern and associated environmental variables from the Coastal Wetland Monitoring Program (2016-2017) and the Great Lakes Marsh Monitoring Program (1995-1997, 2016-2017).
variableList.csv: a list of environmental variables used in the data analysis
wetland classifications.csv: a list of hydroperiods associated with five classes of wetlands
Data prep_Ecosphere.R: Load DWS data and combine with GL_Data.csv into a single dataset (wetlandData)
DataSetCreation_Ecosphere.Rmd: Use the wetlandData dataset to create training and validation datasets.
RegionalAnalysis_Ecosphere.Rmd: Conduct analysis of training dataset, evaluate model performances with validation dataset
RegionalAnalysis_landscapeOnly_Ecosphere.Rmd: Re-run analysis using only landscape-scale environmental covariates
TablesResultsDiscussion_Ecosphere.Rmd: Markdown script for tables, appendices, and additional calculations for Results and Discussion sections of accompanying manuscript
Figures2_Ecosphere.Rmd: Markdown script for Figure 2 of the accompanying manuscript
Referenced by
Elliott, L.H., A.M. Bracey, G.J. Niemi, D.H. Johnson, T.M. Gehring, E.E. Gnass Giese, G.P. Grabas, R.W. Howe, C.J. Norment, D.C. Tozer and L.D. Igl. 23. Application of habitat association models across regions: useful explanatory power retained in wetland bird case study.
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USGS
USFWS
Great Lakes Restoration Initiative
Great Lakes National Program Office of the United States Environmental Protection Agency, grant number GL-00E01567
Ducks Unlimited Canada
Eastern Habitat Joint Venture
Environment and Climate Change Canada
USEPA
Government of Ontario
John and Pat McCutcheon Charitable Foundation
Nature Conservancy of Canada
TD Friends of the Environment Foundation
Wildlife Habitat Canada
USFWS
Great Lakes Restoration Initiative
Great Lakes National Program Office of the United States Environmental Protection Agency, grant number GL-00E01567
Ducks Unlimited Canada
Eastern Habitat Joint Venture
Environment and Climate Change Canada
USEPA
Government of Ontario
John and Pat McCutcheon Charitable Foundation
Nature Conservancy of Canada
TD Friends of the Environment Foundation
Wildlife Habitat Canada
item.page.sponsorshipfunderid
item.page.sponsorshipfundingagency
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Elliott, Lisa H; Bracey, Annie M; Niemi, Gerald J; Johnson, Douglas H; Gehring, Thomas M; Gnass Giese, Erin E; Fiorino, Giuseppe E; Howe, Robert W; Lawrence, Gregory J; Norment, Christopher J; Tozer, Douglas C; Igl, Lawrence D. (2022). Wetland bird case study for application of habitat association models across Great Lakes and Prairie Pothole regions. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/3gvn-9t46.
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GL_Data.csv
point count data for Pied-billed Grebe, Virginia Rail, Sora, and American Bittern and associated environmental variables from the Coastal Wetland Monitoring Program (2016-2017) and the Great Lakes Marsh Monitoring Program (1995-1997, 2016-2017).
(1.22 MB)
variableList.csv
a list of environmental variables used in the data analysis
(4.49 KB)
wetland classifications.csv
a list of hydroperiods associated with five classes of wetlands
(90 B)
Data prep_Ecosphere.R
Load DWS data and combine with GL_Data.csv into a single dataset (wetlandData)
(2.65 KB)
DataSetCreation_Ecosphere.rmd
Use the wetlandData dataset to create training and validation datasets
(9.31 KB)
RegionalAnalysis_Ecosphere.Rmd
Conduct analysis of training dataset, evaluate model performances with validation dataset
(19.62 KB)
RegionalAnalysis_landscapeOnly_Ecosphere.Rmd
Re-run analysis using only landscape-scale environmental covariates
(19.59 KB)
TablesResultsDiscussion_Ecosphere.Rmd
Markdown script for tables, appendices, and additional calculations for Results and Discussion sections of accompanying manuscript
(29.22 KB)
Figures2_Ecosphere.Rmd
Markdown script for Figure 2 of the accompanying manuscript
(32.39 KB)
Readme.txt
Metadata associated with dataset and code files
(23.25 KB)
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