Dynamics of double-knotted DNA molecules under nanochannel confinement

Mao, Runfang
Dorfman, Kevin D
2024-05-30
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https://hdl.handle.net/11299/263593
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10-01-2023
05-31-2024

Date completed

05-31-2024

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Journal Title

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Volume Title

Title

Dynamics of double-knotted DNA molecules under nanochannel confinement

Published Date

2024-05-30

Authors

Group

Dorfman Research Group - University of Minnesota Department of Chemical Engineering and Materials Science

Author Contact

Dorfman, Kevin D.
dorfman@umn.edu

Type

Dataset
Simulation Data

Abstract

This dataset contains the output files and associated codes from the simulation in "Dynamics of double-knotted DNA molecules under nanochannel confinement". Langevin dynamics simulations were used to investigate the two knot dynamics and interactions in nanochannel confined DNA molecules. With this dataset, users should be able to regenerate the figures that appeared in the paper.

Description

With the data provided here, users can reproduce all the figures presented in the associated paper entitled "Dynamics of double-knotted DNA molecules under nanochannel confinement". The dataset is split into the subdirectories "Figure#" corresponding to each figure in the main paper.

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License

CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)

Funding information

This work was supported by National Science Foundation through award CBET-2016879. Computational resources were provided by the Minnesota Supercomputing Institute.

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Suggested citation

Mao, Runfang; Dorfman, Kevin D. (2024). Dynamics of double-knotted DNA molecules under nanochannel confinement. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://hdl.handle.net/11299/263593.

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Description
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Figure3.zip
Output files and associated codes for Figure 3
(420.77 KB)

Figure4.zip
Output files and associated codes for Figure 4
(24.38 KB)

Figure5.zip
Output files and associated codes for Figure 5
(236.98 KB)

Figure6.zip
Output files and associated codes for Figure 6
(4.41 MB)

Figure7.zip
Output files and associated codes for Figure 7
(161.63 KB)

Figure8.zip
Output files and associated codes for Figure 8
(186.36 KB)

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