Phenotypic and genotypic data of barley Gen10 population to study a pericentromeric region on chromosome 6H
2021-06-01
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2015-04-15
2018-12-20
2018-12-20
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2019-03-20
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Title
Phenotypic and genotypic data of barley Gen10 population to study a pericentromeric region on chromosome 6H
Published Date
2021-06-01
Author Contact
Smith, Kevin
smith376@umn.edu
smith376@umn.edu
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Dataset
Experimental Data
Field Study Data
Genomics Data
Experimental Data
Field Study Data
Genomics Data
Abstract
The phenotypic and genotypic data of the Gen10 population used to study a genetic region on chromosome 6H of barley associated with multiple traits. Gen10 is a population of ~100 Chevron-derived recombinant near-isogenic lines that contained the Fusarisum head blight/kernel discoloration resistance locus from Chevron, a landrace, in the genetic background of Lacey, an elite malting barley variety.
Description
One phenotypic data file consists of multiple trials (one trial per sheet) and each trial with one or more phenotypic traits such as Fusarium head blight severity score and yield; one genotypic data file consists of genotypic Illumina 50K chip data of 101 Gen10 lines across chromosome 6H as well as that of the parents Gen2-129 and Lacey sequenced in fall 2018, also included are the parent genotypes in summer 2018 sequencing run which were used to impute the bad parent genotypes in the fall 2018 sequencing run.
Referenced by
"Genetic dissection of a pericentromeric region of barley chromosome 6H associated with Fusarium head blight resistance, grain protein content, and agronomic traits" submitted to the Theoretical and Applied Genetics Journal
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University of Minnesota Small Grains Initiative
USDA-National Institute of Food and Agriculture Triticeae CAP
USDA-National Institute of Food and Agriculture Triticeae CAP
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Yin, Lu; Huang, Yadong; Sallam, Ahmad; Heinen, Shane; Li, Lin; Beaubien, Karen; Dill-Macky, Ruth; Dong, Yanhong; Steffenson, Brian; Smith, Kevin; Muehlbauer, Gary. (2021). Phenotypic and genotypic data of barley Gen10 population to study a pericentromeric region on chromosome 6H. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/hwkm-ev34.
View/Download file
| File View/Open | Description | Size |
|---|---|---|
| Gen10PhenotypeDataByTrial.xlsx | Phenotypic data of 79 Gen10 recombinant isogenic barley lines organized by trials | 129.23 KB |
| Gen10_50Kgenotype101linesAll6H.xlsx | Genotypic data (Illumina 50K SNP chip) of 101 Gen10 recombinant near-isogenic barley lines across chromosome 6H | 1.59 MB |
| Readme.txt | Readme | 11.54 KB |
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