Barley Genotyping SNPs Annotated using SNPMeta

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Probe contextual sequences were obtained from Tables S6-10 from Close et al. 2009

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Barley Genotyping SNPs Annotated using SNPMeta

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Kono, Thomas J Y


Genomics Data


SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at


These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.

Referenced by

Kono, T. J. Y., Seth, K., Poland, J. A. and Morrell, P. L. (2014), SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Molecular Ecology Resources, 14: 419–425. doi: 10.1111/1755-0998.12183

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Funding information

US National Institute for Food and Agriculture (NIFA) (2011-68002-30029)
USDA National Needs Fellowship (USDA NIFA 2011-38420-20068)
USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D)
Kansas State University

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Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L. (2016). Barley Genotyping SNPs Annotated using SNPMeta. Retrieved from the Data Repository for the University of Minnesota (DRUM),
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File View/OpenDescriptionSize
Barley_SNP_Annotations.txtBarley SNP Annotations1.33 MB
Readme_BarleySNPAnnotations.txtDescription of the Annotation Column Fields and Notes4.23 KB

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