Barley Genotyping SNPs Annotated using SNPMeta
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Collection period
2013
2013
2013
Date completed
2013
Date updated
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Source information
Probe contextual sequences were obtained from Tables S6-10 from Close et al. 2009
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Title
Barley Genotyping SNPs Annotated using SNPMeta
Published Date
2016-07-18
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Author Contact
Kono, Thomas J Y
konox006@umn.edu
konox006@umn.edu
Type
Dataset
Genomics Data
Genomics Data
Abstract
SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.
Description
These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.
Referenced by
Kono, T. J. Y., Seth, K., Poland, J. A. and Morrell, P. L. (2014), SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Molecular Ecology Resources, 14: 419–425. doi: 10.1111/1755-0998.12183
http://dx.doi.org/10.1111/1755-0998.12183
http://dx.doi.org/10.1111/1755-0998.12183
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Funding information
US National Institute for Food and Agriculture (NIFA) (2011-68002-30029)
USDA National Needs Fellowship (USDA NIFA 2011-38420-20068)
USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D)
Kansas State University
USDA National Needs Fellowship (USDA NIFA 2011-38420-20068)
USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D)
Kansas State University
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Suggested citation
Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L. (2016). Barley Genotyping SNPs Annotated using SNPMeta. Retrieved from the Data Repository for the University of Minnesota (DRUM), http://doi.org/10.13020/D63K53.
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