Barley Genotyping SNPs Annotated using SNPMeta

Kono, Thomas J Y
Kiran, Seth
Poland, Jesse A
Morrell, Peter L
2016-07-18
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http://doi.org/10.13020/D63K53
 https://hdl.handle.net/11299/181367
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Collection period

2013
2013

Date completed

2013

Date updated

Time period coverage

Geographic coverage

Source information

Probe contextual sequences were obtained from Tables S6-10 from Close et al. 2009

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Title

Barley Genotyping SNPs Annotated using SNPMeta

Published Date

2016-07-18

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Author Contact

Kono, Thomas J Y
konox006@umn.edu

Type

Dataset
Genomics Data

Abstract

SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.

Description

These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.

Referenced by

Kono, T. J. Y., Seth, K., Poland, J. A. and Morrell, P. L. (2014), SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Molecular Ecology Resources, 14: 419–425. doi: 10.1111/1755-0998.12183
http://dx.doi.org/10.1111/1755-0998.12183

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License

Attribution 3.0 United States
 https://creativecommons.org/licenses/by/3.0/us/

Publisher

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Data Repository for U of M (DRUM)

Funding information

US National Institute for Food and Agriculture (NIFA) (2011-68002-30029)
USDA National Needs Fellowship (USDA NIFA 2011-38420-20068)
USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D)
Kansas State University

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Suggested citation

Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L. (2016). Barley Genotyping SNPs Annotated using SNPMeta. Retrieved from the Data Repository for the University of Minnesota (DRUM), http://doi.org/10.13020/D63K53.

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Description
Size
Barley_SNP_Annotations.txt
Barley SNP Annotations
(1.33 MB)

Readme_BarleySNPAnnotations.txt
Description of the Annotation Column Fields and Notes
(4.23 KB)

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