Transcriptomics analysis (RNA-sequencing) of Methanococcus maripaludis wild-type strain and moeA deletion mutant.

Abdul Halim, Mohd Farid
Costa, Kyle C.
Fonseca, Dallas
Niehaus, Thomas
2023-10-02
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https://doi.org/10.13020/YY0Q-8870
 https://hdl.handle.net/11299/257278
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2023-01-11
2023-02-17

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Transcriptomics analysis (RNA-sequencing) of Methanococcus maripaludis wild-type strain and moeA deletion mutant.

Published Date

2023-10-02

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University of Minnesota Costa Lab

Author Contact

Costa, Kyle C.
kcosta@umn.edu

Type

Dataset
Genomics Data

Abstract

Transcriptomic analysis of total RNA for Methanococcus maripaludis grown in McCas-formate medium. The data compared the RNA abundance between the wild-type strain and the mutant strain with the gene encoding molybdopterin molybdotransferase (moeA, MMP1619) deletion. Released for the submission of manuscript for publication.

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Referenced by

Mohd Farid Abdul Halim, Dallas R Fonseca, Thomas D Niehaus, Kyle C Costa. 2023. Functionally redundant formate dehydrogenases enable formate-dependent growth in Methanococcus maripaludis. bioRxiv 2023.05.09.540023
https://doi.org/10.1101/2023.05.09.540023

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CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)

Funding information

U.S. Department of Energy, Office of Science, Basic Energy Sciences under grant number DE-SC0019148

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Abdul Halim, Mohd Farid; Costa, Kyle C.; Fonseca, Dallas; Niehaus, Thomas. (2023). Transcriptomics analysis (RNA-sequencing) of Methanococcus maripaludis wild-type strain and moeA deletion mutant.. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/YY0Q-8870.

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Description
Size
alignment.tsv
Alignment data for RNAseq
(130 B)

hisat2_counts.tsv
Hisat count data
(35.91 KB)

Sample PCA.pdf
Sample PCA analysis
(11.02 KB)

143 Differentially Expressed Genes Heatmap.tiff
Differentially expressed gene heatmap
(3 MB)

143 Differentially Expressed Genes In DmoeA vs WT.tsv
Differentially expressed gene
(23.94 KB)

143 Differentially Expressed Genes In DmoeA vs WT.tsv.xlsx
Differentially expressed gene in Excel format
(28.89 KB)

All Quantified Genes.tsv
All quantified gene data
(254.88 KB)

All Quantified Genes.tsv.xlsx
All quantified gene data in Excel format
(186.2 KB)

SeqCenter Project Report.pdf
Project report from SeqCenter (methods)
(168.65 KB)

Halim_2023_Readme.txt
Description of the data and files
(12.3 KB)

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