Setaria viridis ME034V TE annotation table

Read, Andrew
Liang, Zhikai
2021-12-15
Thumbnail Image

Persistent link to this item

https://doi.org/10.13020/32ca-4m22
 https://hdl.handle.net/11299/225624
Statistics
View Statistics

Keywords

Collection period

Date completed

Date updated

Time period coverage

Geographic coverage

Source information

Journal Title

Journal ISSN

Volume Title

Title

Setaria viridis ME034V TE annotation table

Published Date

2021-12-15

Authors

Group

UMN CBS

Author Contact

Springer, Nathan
springer@umn.edu

Type

Dataset
Other Dataset

Abstract

Structural and homology based TE annotation of the Setaria viridis ME034V genome.

Description

The EDTA transposable element annotation pipeline was used to identify structural and homology based transposons in the model monocot Setaria viridis ME034V genome. Non-transposon repeats annotated by EDTA were stripped to generate these minimal TE bed files. The annotations were used in a comparative analysis of DNA methylation in wild type and a DRM disrupted methylation mutant.

Referenced by

Read, A. C., Weiss, T., Crisp, P. A., Liang, Z., Noshay, J., Menard, C. C., Wang, C., Song, M., Hirsch, C.N., Springer, N. M. & Zhang, F. (2022). Limited consequences for loss of RNA-directed DNA methylation in Setaria viridis domains rearranged methyltransferase (DRM) mutants. bioRxiv. 2022.01.05.474142
https://doi.org/10.1101/2022.01.05.474142

Related to

Replaces

item.page.isreplacedby

License

Attribution-NonCommercial-NoDerivs 3.0 United States
 http://creativecommons.org/licenses/by-nc-nd/3.0/us/

Publisher

Collections

Data Repository for U of M (DRUM)

Funding information

item.page.sponsorshipfunderid

item.page.sponsorshipfundingagency

item.page.sponsorshipgrant

Previously Published Citation

Other identifiers

Suggested citation

Read, Andrew; Liang, Zhikai. (2021). Setaria viridis ME034V TE annotation table. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/32ca-4m22.

View/Download File

File View/Open
Description
Size
Svm_STRUCT_TE_MINIMAL.bed
ME034V Structural TE Annotation
(147.69 KB)

Svm_HomologyTE_MINIMAL.bed
ME034V Homology TE Annotation
(4.24 MB)

ReadMe.txt
Description of data
(4.29 KB)

Content distributed via the University Digital Conservancy may be subject to additional license and use restrictions applied by the depositor. By using these files, users agree to the Terms of Use. Materials in the UDC may contain content that is disturbing and/or harmful. For more information, please see our statement on harmful content in digital repositories.