Data supporting "Cell-free expression with a quartz crystal microbalance enables rapid, dynamic, and label-free characterization of membrane-interacting proteins"
2024-07-15
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2020-06-01
2024-05-31
2024-05-31
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2024-05-31
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Data supporting "Cell-free expression with a quartz crystal microbalance enables rapid, dynamic, and label-free characterization of membrane-interacting proteins"
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2024-07-15
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Noireaux, Vincent
noireaux@umn.edu
noireaux@umn.edu
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Abstract
Integral and interacting membrane proteins (IIMPs) constitute a vast family of biomolecules that perform essential functions in all forms of life. However, characterizing their interactions with lipid bilayers remains limited due to challenges in purifying and reconstituting IIMPs in vitro or labeling IIMPs without disrupting their function in vivo. Here, we report cell-free transcription-translation in a quartz crystal microbalance with dissipation (TXTL-QCMD) to dynamically characterize interactions between diverse IIMPs and membranes without protein purification or labeling. As part of TXTL-QCMD, IIMPs are synthesized using cell-free transcription-translation (TXTL), and their interactions with supported lipid bilayers are measured using a quartz crystal microbalance with dissipation (QCMD). TXTL-QCMD reconstitutes known IIMP-membrane dependencies, including specific association with prokaryotic or eukaryotic membranes, and the multiple-IIMP dynamical pattern-forming association of the E. coli division-coordinating proteins MinCDE. Applying TXTL-QCMD to the recently discovered Zorya anti-phage system that is unamenable to labeling, we discovered that ZorA and ZorB integrate within the lipids found at the poles of bacteria while ZorE diffuses freely on the non-pole membrane. These efforts establish the potential of TXTL-QCMD to broadly characterize the large diversity of IIMPs.
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One Excel file that outlines the information for each file present in the zip file containing all the data (main manuscript and SI).
One zip file containing the data for all the figures in the manuscript and SI (Excel files).
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Khakimzhan, Aset; Izri, Ziane; Thompson, Seth; Dmytrenko, Oleg; Fischer, Patrick; Beisel, Chase; Noireaux, Vincent. (2024). Data supporting "Cell-free expression with a quartz crystal microbalance enables rapid, dynamic, and label-free characterization of membrane-interacting proteins". Retrieved from the Data Repository for the University of Minnesota (DRUM).
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National Science Foundation BBSRC-NSF/BIO 2017932 (VN)
Deutsche Forschungsgemeinschaft SPP 2330 program BE 6703/2-1 (CB)
Deutsche Forschungsgemeinschaft SPP 2330 program BE 6703/2-1 (CB)
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Khakimzhan, Aset; Izri, Ziane; Thompson, Seth; Dmytrenko, Oleg; Fischer, Patrick; Beisel, Chase; Noireaux, Vincent. (2024). Data supporting "Cell-free expression with a quartz crystal microbalance enables rapid, dynamic, and label-free characterization of membrane-interacting proteins". Retrieved from the Data Repository for the University of Minnesota (DRUM), https://hdl.handle.net/11299/264081.
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