Trichome density phenotypic data, image data, candidate genes Nanopore sequencing data

Yin, Lu
Clark, Matthew
2020-08-13
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https://doi.org/10.13020/mqze-pw21
 https://hdl.handle.net/11299/214951
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2018-11-01
2020-05-30

Date completed

2020-06-04

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Title

Trichome density phenotypic data, image data, candidate genes Nanopore sequencing data

Published Date

2020-08-13

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Author Contact

Yin, Lu
yinxx134@umn.edu

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Dataset
Experimental Data
Genomics Data

Abstract

Two experiments of phenotypic data on trichome density scores and sequencing data in a hybrid grape population (GE1025 family and GE1783 family). The excel file contains this data. Experiment 1 was conducted on greenhouse-maintained GE1025 cuttings in 2018 and 2019 and on field-grown leaves of GE1025 in 2019 (3 environments). Experiment 2 was conducted on GE1783 field-grown leaves in 2019 (1 environment). Experiment 1 was conducted under a dissecting scope. The images were where the trichome scores were obtained in Experiment 2. Nanopore sequencing data was part of Experiment 2. It is released now because it is under review for publication and it is needed to derive the conclusion for the fine mapped trichome region on chromosome 1 of hybrid grapes (Lu Yin's Ph.D. thesis in 2020 Chapter 4). This study on trichome offers information for hybrid grape breeding programs for a minor role in foliar phylloxera resistance.

Description

The Excel file contains phenotypic trichome scores. The images were where the phenotypic trichome scores in Experiment 2 derived from. The Nanopore sequencing data provides information on sequenced trichome candidate genes.

Referenced by

Yin, L., Karn, A., Cadle-Davidson, L., Zou, C., Underhill, A., Atkins, P., Treiber, E., Voytas, D., Clark, M. Fine Mapping of Leaf Trichome Density Revealed A 140-kb Region on Chromosome 1 in Cold-Hardy Hybrid Wine Grape Populations. Frontiers in Plant Science.
https://doi.org/10.3389/fpls.2021.587640

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CC0 1.0 Universal
 http://creativecommons.org/publicdomain/zero/1.0/

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Data Repository for U of M (DRUM)

Funding information

USDA-NIFA Specialty Crop Research Initiative Award No. 2017- 51181-26829
Minnesota Department of Agriculture Specialty Crop Grant
University of Minnesota grant-in-aid program

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Suggested citation

Yin, Lu; Clark, Matthew. (2020). Trichome density phenotypic data, image data, candidate genes Nanopore sequencing data. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/mqze-pw21.

View/Download File

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Description
Size
LeafTrichomePhenotype.xlsx
Trichome density phenotypic scores (GE1025 in 2018, 2019, 2019 field; GE1783 in 2019 field; parenta checks; Pinot mutants)
(444.02 KB)

LeafTrichomeGE1783_1env.zip
GE1783 scanned images to derive trichome scores in Experiment 2
(475.61 MB)

LeafTrichomeGE1783_1envAdaVHDs.zip
GE1783 scanned images to derive trichome scores in Experiment 2, additional samples for adaxial vein simple density
(82.54 MB)

ChecksPinots.zip
Images to derive trichome scores parental/grandparental checks and Pinot mutants
(275.78 MB)

sequenceData.zip
bam and indexed bam files for one pseudogene within our fine mapped region and three candidate genes on chromosome 1 for MN1264 and MN1246 (on Pinot Noir 12X reference and V. riparia genome)
(11.13 MB)

leafPosTriGE1783-0168001.jpg
Thumbnail display on the record
(2.24 MB)

Readme.txt
Readme
(6.19 KB)

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