Title
Barley Genotyping SNPs Annotated using SNPMeta
Published Date
2016-07-18
Authors
Author Contact
Kono, Thomas J Y (konox006@umn.edu)
Type
Dataset
Genomics Data
Abstract
SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.
Description
These are SNPs on two Illumina GoldenGate genotyping arrays and one 9k iSelect genotyping array. The ascertainment scheme for the SNPs is available in Close, Timothy J., et al. "Development and implementation of high-throughput SNP genotyping in barley." BMC genomics 10.1 (2009): 1.
Funding information
Sponsorship:
US National Institute for Food and Agriculture (NIFA) (2011-68002-30029); USDA National Needs Fellowship (USDA NIFA 2011-38420-20068); USDA - Agricultural Research Service (Appropriation No. 5430-21000-006-00D); Kansas State University
Referenced by
Kono, T. J. Y., Seth, K., Poland, J. A. and Morrell, P. L. (2014), SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Molecular Ecology Resources, 14: 419–425. doi: 10.1111/1755-0998.12183
License
Attribution 3.0 United States
Suggested Citation
Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L.
(2016). Barley Genotyping SNPs Annotated using SNPMeta.
Retrieved from the Data Repository for the University of Minnesota,
http://doi.org/10.13020/D63K53.
