Browsing by Author "Springer Lab"

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    Maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design
    (2017-12-13) Springer, Nathan M; Li, Qing; Crisp, Peter A; pcrisp@umn.edu; Crisp, Peter A; Springer Lab
    Table detailing the design and genomic coordinates (v2 and v4) for the maize bisulfite coupled sequence capture (SeqCap-Epi-v2) probe design for profiling of the maize methylome. Released to accompany our publication on DNA methylation changes induced by tissue culture (Han et al 2017) as a supporting supplemental methods file.
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    Springer Lab UAV Maize Phenotyping Project at UMN StPaul: 2018 and 2019
    (2020-05-05) Tirado, Sara B; Hirsch, Candice N; Springer, Nathan M; springer@umn.edu; Springer, Nathan M; Springer Lab
    This dataset provides a valuable resource for evaluating the utility of unmanned aerial vehicles to collect phenotypic data in agricultural fields. Many flights throughout the growing season of a maize experiment were conducted and this dataset includes digital elevation models generated from images within these flights, the plot boundary shapefiles for plot identification, plant height values extracted following Tirado et al., 2019 procedure, hand measurement height values conducted following flights, and yield data for each plot. This maize experiment consisted of twelve hybrids planted at three different planting densities (low, medium and high) and two planting dates (early and late) across two years and therefore provides a valuable resource for evaluating how temporal data collected from UAVs can aid in assessing plant productivity. It can also be utilized to develop and test different protocols for plant height extraction from DEMs at different growth stages as the hand measurements can be used to test the accuracy.