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Browsing by Author "Kono, Thomas J Y"

Now showing 1 - 3 of 3
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    Barley Genotyping SNPs Annotated using SNPMeta
    (2016-07-18) Kono, Thomas J Y; Kiran, Seth; Poland, Jesse A; Morrell, Peter L; konox006@umn.edu; Kono, Thomas J Y
    SNPs annotations were derived from publicly available DNA sequences in GenBank using BLAST. Gene name, functional impact, and other information are returned using the program SNPMeta available for download at https://github.com/MorrellLAB/SNPMeta.
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    Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans
    (2016-09-26) Anderson, J; Kono, Thomas J Y; Stupar, Robert M; Kantar, Michael B; Morrell, Peter L; kant0063@umn.edu; Kantar, Michael B
    Understanding the genetics basis of adaption is a fundamental goal of biological research. The present study explores an ex situ conservation collection, the USDA germplasm collection, genotyped at 32,416 SNPs, to identify population structure and test for associations with bioclimatic and biophysical variables in Glycine soja, the wild progenitor of Glycine max (soybean). Candidate loci were detected that putatively contribute to adaptation to abiotic stresses.
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    Variants from "The role of deleterious substitutions in crop genomes"
    (2016-07-26) Kono, Thomas J Y; Fu, Fengli; Mohammadi, Mohsen; Hoffman, Paul J; Liu, Chaochih; Stupar, Robert M; Smith, Kevin P; Tiffin, Peter; Fay, Justin C; Morrell, Peter L; konox006@umn.edu; Kono, Thomas J Y
    SNP calls in protein coding regions were obtained from 15 barley and 8 soybean lines. Non synonymous SNPs were predicted to be deleterious or not using three approaches.