Browsing by Subject "protein structure"
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Item The Optimization and Scale-Up of Pea Protein Extractions and Impact on Structural and Functional Properties(2020-08) Hansen, LucyAs the demand for plant proteins continues to grow, there is a need to develop alternative sources of protein other than soy protein, which is limited by being sourced from a GMO crop and a “Big Eight” allergen. Yellow field peas (Pisum sativum L. subsp. arvense) are similar to soybeans in their agricultural benefits and protein profiles but are non-GMO and of low allergenicity. While soy protein has undergone decades of research to optimize extraction conditions and evaluate structural and functional properties, pea protein is less researched. Currently, pea protein is only mass produced by alkaline solubilization with isoelectric precipitation, which may cause damage to the protein by altering its native structure, thus reducing protein functionality in food applications. Therefore, in order to make pea protein competitive with soy protein, there is a need to optimize both the conditions used for pea protein extractions, as well as the methods of extraction, to produce pea protein isolates (PPI) with high protein purity and preserved structural properties. Additionally, the scalability of optimized extraction methods must be evaluated to determine industrial feasibility. Therefore, the objectives of this study were: (1) optimize pea protein extraction conditions to maximize protein purity and yield following an alkaline solubilization with isoelectric precipitation and a salt solubilization coupled with membrane filtration; (2) characterize the impact of the two extraction methods on the protein structure and relate structure to functionality; (3) produce pea protein isolates on a pilot scale following the optimized benchtop extraction methods and evaluate the impact of a larger-scale production on protein structure and functionality. Extraction conditions including solubilization pH, isoelectric precipitation pH, solubilization duration, number of solubilizations, and use of dialysis were optimized for PPI production by alkaline solubilization coupled with isoelectric precipitation (pH-extraction), based on protein purity and yield as well as industrial feasibility. Similarly, purification conditions including use of ultrafiltration (UF) and dialysis, individually or combined, were optimized for PPI production by salt solubilization coupled with membrane filtration (salt-extraction). Optimized benchtop methods were then scaled-up to pilot plant production. The scaled-up (SU) protein extractions had some notable differences compared to the benchtop counterparts. Differences included overnight solubilization, use of diafiltration instead of dialysis, pasteurization, homogenization, and spray drying. The structural characteristics of the benchtop and SU pH- and salt- extracted PPIs were compared by determining the protein profile using SDS-PAGE, protein denaturation by DSC, surface charge by measuring zeta potential, and surface hydrophobicity as measured by a spectrophotometric method. Additionally, the functional properties of the PPIs were compared by measuring protein solubility, gelation, emulsification, and foaming properties. The optimized pH extraction conditions were double solubilization for one hour at pH 7.5, followed by isoelectric precipitation at pH 4.5, and dialysis of the neutralized extract. The optimized purification conditions for salt extraction were ultrafiltration followed by dialysis. The benchtop pH-PPI and salt-PPI had protein purity of 87.6% and 92.8%, and protein yield of 64.7% and 72.0%, respectively. The SU-pH and SU-salt PPIs had comparable protein purity, at 88.7% and 92.4%, while protein yields were not determined due to sampling throughout the protein extractions, as well as the recovery of only the high solids retentate from UF. Protein profiles were generally similar for all PPIs, except that the salt-extracted PPIs contained albumin proteins, while the pH-PPIs did not. Salt-PPIs, therefore, had a slightly higher isoelectric point than pH-PPIs, leading to lower surface charge at pH 7. Because of the presence of albumins, salt-PPI had slightly lower surface hydrophobicity than pH-PPI. Compared to benchtop PPIs, the protein in SU PPIs were partially denatured, had higher surface hydrophobicity, and were more aggregated. Differences in structural characteristics led to observed differences in functionality. Salt-PPIs had slightly lower protein solubility at pH 7, and comparable or higher solubility at pH 3.4. Though the benchtop salt-PPI had higher gel strength than the pH-PPI, the gel strength of the SU-salt PPI was comparable to that of the SU-pH PPI due to similar surface charges and levels of denaturation and aggregation. Emulsification capacity (EC) of the benchtop and SU PPIs was similar. Due to differences in relative amounts of globulins and albumins, the pH-PPIs had higher emulsion stability (ES), yet lower EAI, than the salt-PPIs. Similarly, higher albumin content in salt-PPIs potentially contributed to higher foaming capacity (FC) and foaming stability (FS) than pH-PPIs. In comparison to SU PPIs, commercially available SPI and PPI (cSPI and cPPI, respectively) were completely denatured and extensively aggregated. Compared to cSPI, the SU PPIs had superior solubility at pH 3.4. However, cSPI had superior gelation and emulsification properties. On the other hand, both SU-pH and SU-salt PPIs had superior functional properties, in general, compared to cPPI. Overall, this study demonstrated successful optimization and scalability of two pea protein extraction methods: alkaline solubilization with isoelectric precipitation and salt solubilization coupled with membrane filtration. Both optimized benchtop methods achieved high protein purity and yield, while using relatively nondenaturing conditions. Scaled-up extractions achieved similar protein purity to the benchtop counterparts. Further work investigating complete recovery of all fractions, while monitoring levels of protein denaturation, is needed to determine scaled-up extraction yields. The slight differences in structural and functional properties between benchtop and SU PPIs were mostly due to the thermal treatment the SU PPIs received that caused partial denaturation and aggregation. However, compared to cPPI, SU PPIs were less denatured, resulting in generally superior functionality that should be considered advantageous to industry. This study is significant in demonstrating that PPI, with superior functionality to commercially available PPI, can be produced on a large scale through both the traditional pH extraction and the novel salt extraction coupled with membrane filtration, under optimized conditions.Item Structural studies of two enzymes in the Raetz pathway of lipid A synthesis, LpxB and LpxH(2018-05) Bohl, ThomasGram-negative bacteria are distinguished from Gram-positive bacteria by the secondary membrane that surrounds their peptidoglycan cell wall. The outer leaflet of this membrane is primarily composed of the glycolipid lipopolysaccharide (LPS), which has lipid A, core oligosaccharide, and O-antigen portions. LPS helps protect Gram-negative bacteria from hydrophobic toxins and, in pathogenic bacteria, from the host immune system. The membrane anchor portion of LPS (lipid A) is responsible for stimulation of the inflammatory response of the mammalian immune system by LPS via activation of the Toll-like receptor 4/myeloid differentiation factor 2 complex. In systemic infections, overstimulation of this receptor causes acute inflammation, which can cause septic shock. Modifications to the LPS, particularly to the lipid A portion, can help bacteria evade the host immune system by disguising the bacteria, modulating the inflammatory response, and inhibiting interactions with antimicrobial host factors. Lipid A is synthesized in the well characterized and largely conserved Raetz pathway in the cytosol and at the cytosolic face of the inner membrane. The non-repeating core oligosaccharide is synthesized on lipid A the cytoplasmic face of the inner membrane, and the repeating O-antigen polysaccharide is attached to the core-lipid A molecule at the periplasmic face of the inner membrane. The completed LPS molecules are then transported to the extracellular leaflet of the outer membrane. Structures of proteins involved in LPS synthesis have proved critical to our understanding of LPS synthesis and transport. Moreover, these structures provide targets for rational design of antibiotics targeting Gram-negative bacteria. As the Raetz pathway is the most conserved part of LPS synthesis, the enzymes of the Raetz pathway provide particularly promising targets for development of broad spectrum antibiotics, such as those needed to treat sepsis. Therefore, I studied the structures of two enzymes in the Raetz pathway (LpxH and LpxB). LpxH was crystallized with the α-helical substrate-binding cap domain in a displaced conformation, suggesting that this domain is highly mobile. The structural dynamics of this domain and their relevance to substrate binding were further explored by hydrogen-deuterium exchange mass spectrometry, molecular dynamics simulations, and activity assays. These data supported a model in which a loop in the core hydrolase domain acts as a wedge to promote opening of the capping helices and allow facile substrate binding between these helices. In addition, the first structure of LpxB was determined showing a Glycosyltransferase B superfamily (GT-B) fold modified by the formation of a novel C-terminally swapped dimer wherein the last 87 residues of one subunit complete the GT-B fold of the other subunit. Furthermore, the binding site of the sugar-donor substrate was identified by a structure of LpxB with the UDP product bound. Activity assays supported the formation of this C-terminally swapped dimer in solution and showed that a surface-exposed hydrophobic patch is critical for LpxB activity, which suggested this patch allows productive membrane association required for substrate binding. Thus, the present research has expanded our understanding of two enzymes important in Gram-negative bacterial physiology that are potential targets for antibiotic development.