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Item Influenza In Pigs Prior To Weaning: Sampling Strategies, Transmission Pathways And Approaches To Reduce Prevalence(2020-01) Garrido Mantilla, Jorge EduardoInfluenza in pigs prior to weaning: sampling strategies, transmission pathways and approaches to reduce prevalence General abstract Influenza is an important disease of swine and it represents a threat to public health because it is caused by influenza A virus (IAV), a zoonotic virus with pandemic potential. One of the objectives that producers and veterinarians have is to control influenza in breed-to-wean (BTW) farms by weaning IAV negative pigs. Pigs prior to weaning play an important role in influenza epidemiology because they can maintain endemic infections in BTW farms and they can disseminate IAV to other farms and regions at weaning. Unfortunately, there is limited information regarding the transmission pathways that lead to piglet infections, nor it is known what effect specific pig-rearing practices and farm management procedures may have on these pathways. To properly detect, isolate and characterize IAV genetically and antigenically, it is necessary to have sampling approaches that accurately define disease status yet are cost-effective to conduct. However, IAV detection and isolation can be challenging in endemic situations. Endemicity and transmission of IAV in pig populations can be affected by certain management practices that are necessary in production and do not allow IAV control. Even though, control of influenza is difficult, it is possible. Vaccination is one of the most common strategies to control influenza transmission and sow vaccination can help to reduce IAV prevalence in piglets. However, the diversity of IAV found in farms requires the use of vaccines that antigenically match the wild-type virus circulating in the pigs in order to provide good cross-protection against the field strains. In an effort to increase vaccine efficacy, custom-made vaccines that include viral strains identified in farms are used to help to control influenza in BTW farms. However, despite the widespread use of custom-made vaccines, there is limited data on the long term effectiveness of using custom-made vaccines in farms. Finally, in this thesis, I aimed to address some of the questions that are central to the transmission and control of IAV in BTW farms and reduce the prevalence of IAV in piglets at weaning. Specifically, I aimed to: 1) identify the best sampling strategy to detect and isolate IAV in weaned and growing pigs, 2) determine the role of nurse sows in the transmission and perpetuation of IAV in pigs prior to weaning, and 3) assess the impact of custom-made vaccines in reducing IAV prevalence in an integrated swine production system over time. The results obtained during my studies determined that IAV detection rates are higher when group and environmental sampling strategies are used compared to samples collected from individual pigs. Nevertheless, individual samples may still be needed to obtain a viral isolate or perform genetic sequencing and virus characterization. As part of my work, I developed the udder skin wipe technique to detect IAV from lactating sows and isolate IAV from litters prior to weaning. Furthermore, I identified that management practices such as the use of nurse sows can transmit IAV between litters thereby perpetuating IAV infection in pigs prior to weaning. Finally, our multi-year evaluations of custom-vaccine usage on BTW farms demonstrated that on-going surveillance and characterization of IAV isolates facilitate vaccine updates with custom-made epidemiologically-relevant strains. In addition to selecting epidemiologically-relevant strains, the strain selection criteria should also include the identification of strains with similar HA antigenic properties, e.g. those with an overall HA protein identity of 95% or more and having identical or nearly identical amino acid motifs. Once selected, these strains can be included in the updated vaccines used to immunize sows and reduce IAV prevalence in their pigs at weaning. The findings on my thesis contribute to the understanding of IAV transmission in pigs before weaning and point to specific strategies to improve surveillance and disease control. Nevertheless, more studies are necessary to elucidate strategies to limit IAV infections and transmission in BTW farms.