Browsing by Subject "Brain imaging"
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Item Parallel transmission for magnetic resonance imaging on a 9.4 Tesla Human System.(2010-01) Wu, XiaopingOver recent years, researchers have been increasingly pushing towards using ultrahigh magnetic field (7 Tesla and higher) for magnetic resonance imaging in human to benefit from substantial increases in signal to noise ratio and contrast. However, at ultrahigh field, severe transmit B1 (B1+) inhomogeneity occurs, limiting applications of most conventional MR techniques. Multidimensional spatially selective RF pulses have been proposed as a method to mitigate B1+ inhomogeneity. However, those RF pulses are typically very long and are impractical at high field. Parallel transmission, an emerging technique, makes it possible to design sufficiently short selective RF pulses for use in actual experiments. In this thesis, we demonstrate the first successful implementation of parallel transmission at an ultrahigh field of 9.4 Tesla (T) in the human brain with an eight-channel transmit system, using accelerated (x 4) RF pulses designed to create arbitrarily shaped excitation profiles. To achieve satisfactory excitation accuracy, k-space errors due to gradient system imperfection had to be accurately calibrated and integrated in RF pulse calculation. In order to limit RF power deposition in tissues, an inherent concern for patient safety at very high field, we introduced and demonstrated a new 2D RF pulse design method that effectively reduces specific absorption rate (SAR) while preserving excitation pattern fidelity. SAR reduction efficiency was demonstrated with numerical simulations while excitation pattern fidelity was experimentally verified at 9.4T. Additional preliminary work relevant to B1+ manipulation at high field were also conducted through the course of this thesis, including the implementation of spoke trajectory based transmit excitation with 16 channels at 9.4T, a fast 2D B1 mapping technique and in-depth simulation of SAR in the human brain with multi transmission.Item Technologies For Cortex-Wide Neural Interfacing(2020-03) Ghanbari, LeilaNeural computations occurring simultaneously across cerebral cortical regions are critical for behavior mediation. While, progress has been made to understand how neural activity in specific cortical regions contributes to behavior, there is a lack of tools that allow chronic and simultaneous monitoring and perturbing of neural activity across cortical regions. Exposing the brain requires surgical precision for large craniotomies without damaging underlying tissue. In this thesis, we introduce computer numeric controlled (CNC) robotic surgery platforms developed to automatically perform precise craniotomies in mice based on individualized skull surface profiles, enabling optical access to large brain regions. We also present “See-Shells,” digitally designed and morphologically realistic transparent polymer skulls that allow chronic (>300 days) optical access to 45 mm2 of the dorsal cerebral cortex in the mouse. We demonstrate the ability to perform neural mesoscopic and two-photon imaging across the cortex using See-Shells. “Perforated See-Shells” enable the introduction of neural probes to perturb or record neural activity during whole cortex imaging. All these technologies can be constructed with common desktop fabrication tools and collectively serve as a pipeline for an abundance of investigations into the brain.