This codebook.txt file was generated on 2021-01-28 by wilsonkm

-------------------
GENERAL INFORMATION
-------------------

1. Title of Dataset 
Sulfur bacteria promote dissolution of authigenic carbonates at marine methane seeps

2. Author Information

  Principal Investigator Contact Information
        Name: Beverly Flood
           Institution: University of Minnesota
           Email: beflood@umn.edu

  Associate or Co-investigator Contact Information
        Name: Dalton J. Leprich
           Institution: University of Minnesota

  Associate or Co-investigator Contact Information
           Name: Peter R. Schroedl
           Institution: Boston University

  Associate or Co-investigator Contact Information
        Name: Elizabeth Ricci
           Institution: University of Minnesota

  Associate or Co-investigator Contact Information
           Name: Jeffrey J. Marlow
           Institution: Boston University

  Associate or Co-investigator Contact Information
        Name: Peter R. Girguis
           Institution: Harvard University

  Associate or Co-investigator Contact Information
           Name: Jake V. Bailey
           Institution: University of Minnesota

3. Date of data collection: 2018-10-15 to 2018-10-15

4. Information about funding sources that supported the collection of the data: Sponsorship: NASA Exobiology (NNX-14AK20G); NSF (OCE-0826254); NASA (80NSSC18K1140); NSF (1542506)

--------------------------
SHARING/ACCESS INFORMATION
-------------------------- 

1. Licenses/restrictions placed on the data: CC0 1.0 Universal

2. Links to publications that cite or use the data:
Leprich, D. J., Flood, B. E., Schroedl, P. R., Ricci, E., Marlow, J. J., Girguis, P. R., & Bailey, J. V. (2021). Sulfur bacteria promote dissolution of authigenic carbonates at marine methane seeps. The ISME Journal, 1-14.
https://doi.org/10.1038/s41396-021-00903-3 

3. Recommended citation for the data:
Leprich, Dalton J.; Flood, Beverly E.; Schroedl, Peter R.; Ricci, Elizabeth; Marlow, Jeffery J.; Girguis, Peter R.; Bailey, Jake V.. (2021). Sulfur bacteria promote dissolution of authigenic carbonates at marine methane seeps. Retrieved from the Data Repository for the University of Minnesota, https://doi.org/10.13020/4j4t-e569. 

---------------------
DATA & FILE OVERVIEW
---------------------

1. File List
	A. Filename: ASVs.fa      
	Short description: fasta file of assembled iTag sequences processed through the DADA2 pipeline, pre-contamination filtering. This file may be viewed using a plain text editor.     

	B. Filename: Carbonate_iTag_commands.html
	Short Description:  Markdown file of linux and R commands for DADA2 and PhyloSeq used to generate the iTag data and graphs in the reference manuscript.

	C. Filename: Seep_phyloseq_.xlsx
	Short Description: iTag ASVs counts by sample and taxonomy based on the 132  Silva taxonomy database for all samples in the referenced manuscript.


2. Relationship between files: N/A


3. Additional related data collected that was not included in the current data package:
N/A

4. Are there multiple versions of the dataset? No

--------------------------
METHODOLOGICAL INFORMATION
--------------------------


1. Description of methods used for collection/generation of data: 

Methods can be found in the above titled manuscript //doi.org/10.1038/s41396-021-00903-3

2. Methods for processing the data: <describe how the submitted data were generated from the raw or collected data>
See methods published here https:
//doi.org/10.1038/s41396-021-00903-3

3. Instrument- or software-specific information needed to interpret the data:
N/A

4. Standards and calibration information, if appropriate:
N/A

5. Environmental/experimental conditions:
See above manuscript.

6. Describe any quality-assurance procedures performed on the data:
See above manuscript.

7. People involved with sample collection, processing, analysis and/or submission:
See above manuscript.