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Supporting Data Analysis for "An Integrated Analysis of Phenotypic Selection on Insect Body Size and Development Time"

Eck, Daniel J
Shaw, Ruth G
Geyer, Charles J
Kingsolver, Joel G
2015-05-14
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Persistent link to this item

http://dx.doi.org/10.13020/D6F59K
 https://hdl.handle.net/11299/172272
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Collection period

Date completed

2015

Date updated

Time period coverage

2009-2010 (Kingsolver et al., 2012)

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Source information

Journal Title

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Volume Title

Title

Supporting Data Analysis for "An Integrated Analysis of Phenotypic Selection on Insect Body Size and Development Time"

Published Date

2015-05-14

Authors

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Author Contact

Eck, Daniel J
eckxx049@umn.edu

Type

Dataset
Report
Software Code

Abstract

This technical report (TR) gives details of the data analysis backing up a paper having the same authors as this TR and having the title that is quoted in the title of this TR. It uses the R package knitr to process its source file (Rnw file) containing LaTex and R, so that all R that appears in this document is not cut-and-pasted but actually run and actually produces the results that it appears to produce. This document reproduces all tables and figures from the paper and hence the entire data analysis reported in the paper.

Description

The data for the analysis are in the R object hornworm in the R package aster2, which is a CRAN package. This dataset was created from Msexta.Aster.csv, originally collected by Kingsolver, Diamond, Seiter, & Higgins (2012). Metadata for the hornworm and Msexta.Aster.csv datafiles can be found in documentation for the package; help(hornworm, package="aster2"). Instructions for compiling the source file to produce the technical report can be found in the README.txt file. An appendix of this technical report shows how this R object of class "asterdata" was created from the raw data, a comma separated values (CSV) file. In the aster2 hornworm data: The "id" variable gives the identification number of the Manduca sexta; this variable is unimportant in the analysis. The "resp" variable is short for response vector and it contains all of the realized response variables for every node in the aster graph for every individual. We obtain estimates of parameters using "resp" and compare different aster models using "resp".

Referenced by

Eck, D. J., Shaw, R. G., Geyer, C. J., & Kingsolver, J. (2015). An integrated analysis of phenotypic selection on insect body size and development time. Evolution.
http://dx.doi.org/10.1111/evo.12744

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License

Attribution-ShareAlike 3.0 United States
 http://creativecommons.org/licenses/by-nc-sa/3.0/us/

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Data Repository for U of M (DRUM)

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Suggested citation

Eck, Daniel J; Shaw, Ruth G; Geyer, Charles J; Kingsolver, Joel G. (2015). Supporting Data Analysis for "An Integrated Analysis of Phenotypic Selection on Insect Body Size and Development Time". Retrieved from the Data Repository for the University of Minnesota (DRUM), http://dx.doi.org/10.13020/D6F59K.

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MSexta.Aster.csv
Raw Data File
(5.13 KB)

techreport.v2.Rnw
Source File for Technical Report
(132.52 KB)

techreport.v2.pdf
Technical Report
(364.29 KB)

techreport.v2.txt
Archival Version of Source File
(132.52 KB)

techreport.v2.tex
Archival Version of Compiled Source File
(186.8 KB)

README.v2.txt
Instructions for Compiling Source File
(943 B)

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