Gardner, Melissa Klein2009-10-082009-10-082008-08https://hdl.handle.net/11299/53965UNiversity of Minnesota Ph.D. dissertation. August 2008. Major: Biomedical Engineering. Advisor: David J. Odde. 1 computer file (PDF); xiii, 257 pages, appendices A-E.During mitosis, dynamic arrays of kinetochore-associated microtubules (kMTs) and molecular motors are organized into a mitotic spindle that serves to accurately segregate chromosomes into daughter cells. Understanding the dynamics and organization of mitotic spindle components could ultimately apply to clinical applications, such as in cancer treatment, because of the centrality of the mitotic spindle in mediating cell mitosis. Computer simulation can provide a bridge between mitotic spindle phenotypes and the individual dynamic spindle components that produce these phenotypes. I have found that by simulating the dynamics of kMTs mediating chromosome segregation during mitosis, it is possible to build a model for their regulation which results in specific predictions for molecular functions within the mitotic spindle. Specifically, by simulating the dynamics of molecular motors and chromosomes relative to kMT dynamics, and by comparing these simulations to experiments using fluorescent proteins and cryo-electron tomography, major mechanisms regulating proper chromosome congression in yeast have been uncovered. I have shown (1) that tension generated via the stretch of chromosomes between sister kinetochores is important in regulating the proper separation of sister kinetochores during metaphase, and (2) that a molecular motor, specifically the Kinesin-5 molecular motor Cin8p, is responsible for mediating a gradient in kMT catastrophe frequency that is required for proper chromosome congression. Dynamic microtubule plus-ends are responsible for the proper segregation of chromosomes during mitosis, as well as for other critical cellular functions. By performing molecular-level Monte Carlo simulations of microtubule assembly and comparing these simulations to in vitro measurements of microtubule assembly, I have found that microtubule assembly at the nanoscale is highly variable. This result supports a model for microtubule dynamic instability in which there is exists a substantial and dynamic GTP-cap during microtubule assembly that is critical for microtubule growth.en-USMitosisModelingYeastMicrotubuleMolecular MotorKinesinBiomedical EngineeringThesis or Dissertation