Recommended citation for the data: Intoy, Ben Frederick M; Wynveen, Aaron; Halley, J Woods. (2022). Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution Figure Data. Retrieved from the Data Repository for the University of Minnesota, https://doi.org/10.13020/fjqs-vt12

-------------------
GENERAL INFORMATION
-------------------
1. Title of Dataset: Effects of spatial diffusion on nonequilibrium steady states in a model for prebiotic evolution Figure Data 

2. Author Information

  Principal Investigator Contact Information
        Name: J. Woods Halley 
           Institution: University of Minnesota Twin Cities
           Email: halle001@umn.edu
	   ORCID:

  Associate or Co-investigator Contact Information
        Name: Ben Frederick M. Intoy
           Institution: University of Minnesota Twin Cities
           Email: bmintoy@umn.edu
	   ORCID: 0000-0003-3431-5310

  Associate or Co-investigator Contact Information
           Name: Aaron Wynveen
           Institution: University of Minnesota Twin Cities
           Email: wynveen@umn.edu
           ORCID:

3. Date of data collection: Simulations performed between August 2015 and October 2016.

4. Geographic location of data collection: Simulations and analysis were performed at the University of Minnesota Supercomputing Institute, the University of Minnesota School of Physics and Astronomy Condor cluster, the NASA Advanced Supercomputing division Pleiades supercomputer, and the Open Science Grid.

5. Information about funding sources that supported the collection of the data: NASA NNX14AQ05G

--------------------------
SHARING/ACCESS INFORMATION
-------------------------- 
1. Licenses/restrictions placed on the data: Attribution 3.0 United States

2. Links to publications that cite or use the data: https://doi.org/10.1103/PhysRevE.94.042424

3. Links to other publicly accessible locations of the data: None.

4. Links/relationships to ancillary data sets: None.

5. Was data derived from another source? No.

---------------------
DATA & FILE OVERVIEW
---------------------

1. File List
   A. Filename: 2016PRE_FigData.zip       
      Short description: Contains data and scripts to generate the figures seen in the referenced 2016 PRE publication.  The data and scripts needed to generate the figures are separated into individual sub-directories.
        
   B. Filename: ReadMe.txt      
      Short description: Contains metadata related to the data contained in 2016PRE_FigData.zip.


2. Relationship between files: ReadMe.txt contains metadata for 2016PRE_FigData.zip.




3. Additional related data collected that was not included in the current data package: None.


4. Are there multiple versions of the dataset? no.

--------------------------
METHODOLOGICAL INFORMATION
--------------------------
1. Description of methods used for collection/generation of data: The raw data was generated using simulations described in the referenced 2016 PRE paper and "Nonequilibrium steady states in a model for prebiotic evolution" by Wynveen, Fedorov, and Halley (https://journals.aps.org/pre/abstract/10.1103/PhysRevE.89.022725)


2. Methods for processing the data: Custom scripts with algorithms and measures described in the referenced 2016 PRE paper were used to process and analyze raw simulation data.


3. Instrument- or software-specific information needed to interpret the data: A decompressing program is needed to decode the zip file and standard text editors can be used to view the the files within.  Python and GNUPlot are needed to execute the python (*.py) and gnuplot (*.gnuplot) script files respectively.
python version 3.8.9
gnuplot version 5.4 patch level 1

4. Standards and calibration information, if appropriate: N/A.


5. Environmental/experimental conditions: N/A.


6. Describe any quality-assurance procedures performed on the data: N/A.


7. People involved with sample collection, processing, analysis and/or submission: All authors listed on this data set performed analysis and interpretation of the data.  Ben Intoy was responsible for collecting, processing, and submission.

----------------------------------------
DATA TREE
----------------------------------------
+---2016PRE
|   |   .DS_Store
|   |   
|   +---Fig10
|   |   |   .DS_Store
|   |   |   BandWCorr.gnuplot
|   |   |   
|   |   \---Data
|   |       |   .DS_Store
|   |       |   
|   |       \---BandW60Cut
|   |               p640e0001000PopSpatCovSHIFT.txt
|   |               p640e0010000PopSpatCovSHIFT.txt
|   |               p640e0100000PopSpatCovSHIFT.txt
|   |               
|   +---Fig11
|   |   |   .DS_Store
|   |   |   ExoNonExoRcRd.pdf
|   |   |   Pap1ExoNonExoCut.gnuplot
|   |   |   
|   |   \---Data
|   |           p320e0000100EnsData.txt
|   |           p761e0000100EnsData.txt
|   |           
|   +---Fig12
|   |   |   .DS_Store
|   |   |   ExoDALASurf.gnuplot
|   |   |   
|   |   \---Data
|   |       |   .DS_Store
|   |       |   
|   |       \---ExoticDALA
|   |           |   .DS_Store
|   |           |   ExoDALACountwAttempts.txt
|   |           |   MakeErrorData.py
|   |           |   NonExoDALACountwAttempts.txt
|   |           |   
|   |           +---ExoErr
|   |           |       p226Error.txt
|   |           |       p320Error.txt
|   |           |       p452Error.txt
|   |           |       p640Error.txt
|   |           |       p761Error.txt
|   |           |       p905Error.txt
|   |           |       
|   |           \---NonExoErr
|   |                   p226Error.txt
|   |                   p320Error.txt
|   |                   p452Error.txt
|   |                   p640Error.txt
|   |                   p761Error.txt
|   |                   p905Error.txt
|   |                   
|   +---Fig13
|   |   |   .DS_Store
|   |   |   Pap1ExoGrowth.gnuplot
|   |   |   
|   |   +---Data
|   |   |       p761e0000100ExpGroRat.txt
|   |   |       
|   |   \---ExoData
|   |           p761e0000100data.txt
|   |           
|   +---Fig14
|   |   |   .DS_Store
|   |   |   Pap1PlotsDALDex.py
|   |   |   SlSgDALD.gnuplot
|   |   |   
|   |   \---Data
|   |           MaxEntropy_lmax_nofoodg206.dat
|   |           p452e0000010Net00278ens03Data.dat
|   |           p452e0000010Net00278ens03TimeEntRatNFPop.txt
|   |           
|   +---Fig15
|   |       .DS_Store
|   |       GLDataNormwErrorBlockr03g60Pap1copy.txt
|   |       GLDataNotNormwAttempts.txt
|   |       Pap1Figs.gnuplot
|   |       
|   +---Fig16
|   |       .DS_Store
|   |       DALADynCut.gnuplot
|   |       GLDataNotNormwAttemptsNODYN.txt
|   |       GLDataNotNormWm1wAttempts.txt
|   |       
|   +---Fig17
|   |       DiffvsHopsPerRealTimeMeanStdDev.txt
|   |       DiffVsHPRT.gnuplot
|   |       DiffVsHPRT.pdf
|   |       
|   +---Fig2
|   |       Glob4Loc5SSEnt_Net_Real00005.txt
|   |       
|   +---Fig4and5
|   |   |   .DS_Store
|   |   |   Pap1Plots.gnuplot
|   |   |   
|   |   \---Data
|   |           ColumnDescriptions.txt
|   |           p226e0000001EnsData.txt
|   |           p226e0000010EnsData.txt
|   |           p226e0000100EnsData.txt
|   |           p226e0001000EnsData.txt
|   |           p226e0010000EnsData.txt
|   |           p226e0100000EnsData.txt
|   |           p226e1000000EnsData.txt
|   |           p320e0000001EnsData.txt
|   |           p320e0000010EnsData.txt
|   |           p320e0000100EnsData.txt
|   |           p320e0001000EnsData.txt
|   |           p320e0010000EnsData.txt
|   |           p320e0100000EnsData.txt
|   |           p320e1000000EnsData.txt
|   |           p452e0000001EnsData.txt
|   |           p452e0000010EnsData.txt
|   |           p452e0000100EnsData.txt
|   |           p452e0001000EnsData.txt
|   |           p452e0010000EnsData.txt
|   |           p452e0100000EnsData.txt
|   |           p452e1000000EnsData.txt
|   |           p640e0000001EnsData.txt
|   |           p640e0000010EnsData.txt
|   |           p640e0000100EnsData.txt
|   |           p640e0001000EnsData.txt
|   |           p640e0010000EnsData.txt
|   |           p640e0100000EnsData.txt
|   |           p640e1000000EnsData.txt
|   |           p761e0000001EnsData.txt
|   |           p761e0000010EnsData.txt
|   |           p761e0000100EnsData.txt
|   |           p761e0001000EnsData.txt
|   |           p761e0010000EnsData.txt
|   |           p761e0100000EnsData.txt
|   |           p761e1000000EnsData.txt
|   |           p905e0000001EnsData.txt
|   |           p905e0000010EnsData.txt
|   |           p905e0000100EnsData.txt
|   |           p905e0001000EnsData.txt
|   |           p905e0010000EnsData.txt
|   |           p905e0100000EnsData.txt
|   |           p905e1000000EnsData.txt
|   |           
|   +---Fig6
|   |   |   .DS_Store
|   |   |   DLSurfPlots.gnuplot
|   |   |   SoSg60Surf.gnuplot
|   |   |   
|   |   \---Data
|   |       |   .DS_Store
|   |       |   GLDataNormwErrorBlockr03g60Pap1.txt
|   |       |   
|   |       +---GLError
|   |       |       .DS_Store
|   |       |       p226Error.txt
|   |       |       p320Error.txt
|   |       |       p452Error.txt
|   |       |       p640Error.txt
|   |       |       p761Error.txt
|   |       |       p905Error.txt
|   |       |       
|   |       \---SoSg60
|   |           |   .DS_Store
|   |           |   MakeErrorData.py
|   |           |   SoSg60DataNotNormwAttempts.txt
|   |           |   
|   |           \---Err
|   |                   p226Error.txt
|   |                   p320Error.txt
|   |                   p452Error.txt
|   |                   p640Error.txt
|   |                   p761Error.txt
|   |                   p905Error.txt
|   |                   
|   +---Fig7
|   |       SoSge5000000Counts.txt
|   |       WMLifelikeProbwAttempts.txt
|   |       
|   +---Fig8
|   |   |   .DS_Store
|   |   |   Pap1PlotsExotic.py
|   |   |   SlSgBeforeAndAfterAlt.gnuplot
|   |   |   
|   |   \---Data
|   |       |   .DS_Store
|   |       |   MaxEntropy_lmax_nofoodg206.dat
|   |       |   p640e0000001Net00269ens08Data.dat
|   |       |   
|   |       \---SuperAlive
|   |               RealTimeSlSgSgm.txt
|   |               SimTimeAddRem.txt
|   |               
|   \---Fig9
|       |   .DS_Store
|       |   Pap1PlotsExoticMultiple.py
|       |   SlSgMultExp.gnuplot
|       |   
|       \---Data
|               .DS_Store
|               MaxEntropy_lmax_nofoodg206.dat
|               P00640eta0100000Net00269ens00008Data.dat
|               p640eta0100000Net00269ens00008MultExpSoSgPap1.txt
|               
\---__MACOSX
    |   ._2016PRE
    |   
    \---2016PRE
        |   ._.DS_Store
        |   ._Fig8
        |   
        +---Fig10
        |   |   ._.DS_Store
        |   |   ._BandWCorr.gnuplot
        |   |   
        |   \---Data
        |       |   ._.DS_Store
        |       |   
        |       \---BandW60Cut
        |               ._p640e0001000PopSpatCovSHIFT.txt
        |               ._p640e0010000PopSpatCovSHIFT.txt
        |               ._p640e0100000PopSpatCovSHIFT.txt
        |               
        +---Fig11
        |   |   ._.DS_Store
        |   |   ._ExoNonExoRcRd.pdf
        |   |   ._Pap1ExoNonExoCut.gnuplot
        |   |   
        |   \---Data
        |           ._p320e0000100EnsData.txt
        |           
        +---Fig12
        |   |   ._.DS_Store
        |   |   ._ExoDALASurf.gnuplot
        |   |   
        |   \---Data
        |       |   ._.DS_Store
        |       |   ._ExoticDALA
        |       |   
        |       \---ExoticDALA
        |           |   ._.DS_Store
        |           |   ._ExoDALACountwAttempts.txt
        |           |   ._ExoErr
        |           |   ._MakeErrorData.py
        |           |   ._NonExoDALACountwAttempts.txt
        |           |   ._NonExoErr
        |           |   
        |           +---ExoErr
        |           |       ._p226Error.txt
        |           |       ._p320Error.txt
        |           |       ._p452Error.txt
        |           |       ._p640Error.txt
        |           |       ._p761Error.txt
        |           |       ._p905Error.txt
        |           |       
        |           \---NonExoErr
        |                   ._p226Error.txt
        |                   ._p320Error.txt
        |                   ._p452Error.txt
        |                   ._p640Error.txt
        |                   ._p761Error.txt
        |                   ._p905Error.txt
        |                   
        +---Fig13
        |   |   ._.DS_Store
        |   |   ._Pap1ExoGrowth.gnuplot
        |   |   
        |   +---Data
        |   |       ._p761e0000100ExpGroRat.txt
        |   |       
        |   \---ExoData
        |           ._p761e0000100data.txt
        |           
        +---Fig14
        |   |   ._.DS_Store
        |   |   ._Pap1PlotsDALDex.py
        |   |   ._SlSgDALD.gnuplot
        |   |   
        |   \---Data
        |           ._MaxEntropy_lmax_nofoodg206.dat
        |           ._p452e0000010Net00278ens03Data.dat
        |           ._p452e0000010Net00278ens03TimeEntRatNFPop.txt
        |           
        +---Fig15
        |       ._.DS_Store
        |       ._GLDataNormwErrorBlockr03g60Pap1copy.txt
        |       ._GLDataNotNormwAttempts.txt
        |       ._Pap1Figs.gnuplot
        |       
        +---Fig16
        |       ._.DS_Store
        |       ._DALADynCut.gnuplot
        |       ._GLDataNotNormwAttemptsNODYN.txt
        |       ._GLDataNotNormWm1wAttempts.txt
        |       
        +---Fig17
        |       ._DiffvsHopsPerRealTimeMeanStdDev.txt
        |       ._DiffVsHPRT.gnuplot
        |       ._DiffVsHPRT.pdf
        |       
        +---Fig2
        |       ._Glob4Loc5SSEnt_Net_Real00005.txt
        |       
        +---Fig4and5
        |   |   ._.DS_Store
        |   |   ._Pap1Plots.gnuplot
        |   |   
        |   \---Data
        |           ._ColumnDescriptions.txt
        |           ._p226e0000001EnsData.txt
        |           ._p320e0000001EnsData.txt
        |           ._p320e0000100EnsData.txt
        |           ._p761e0000001EnsData.txt
        |           
        +---Fig6
        |   |   ._.DS_Store
        |   |   ._DLSurfPlots.gnuplot
        |   |   ._SoSg60Surf.gnuplot
        |   |   
        |   \---Data
        |       |   ._.DS_Store
        |       |   ._GLDataNormwErrorBlockr03g60Pap1.txt
        |       |   ._GLError
        |       |   ._SoSg60
        |       |   
        |       +---GLError
        |       |       ._.DS_Store
        |       |       ._p226Error.txt
        |       |       ._p320Error.txt
        |       |       ._p452Error.txt
        |       |       ._p640Error.txt
        |       |       ._p761Error.txt
        |       |       ._p905Error.txt
        |       |       
        |       \---SoSg60
        |           |   ._.DS_Store
        |           |   ._Err
        |           |   ._MakeErrorData.py
        |           |   ._SoSg60DataNotNormwAttempts.txt
        |           |   
        |           \---Err
        |                   ._p226Error.txt
        |                   ._p320Error.txt
        |                   ._p452Error.txt
        |                   ._p640Error.txt
        |                   ._p761Error.txt
        |                   ._p905Error.txt
        |                   
        +---Fig7
        |       ._SoSge5000000Counts.txt
        |       ._WMLifelikeProbwAttempts.txt
        |       
        +---Fig8
        |   |   ._.DS_Store
        |   |   ._Pap1PlotsExotic.py
        |   |   ._SlSgBeforeAndAfterAlt.gnuplot
        |   |   
        |   \---Data
        |       |   ._.DS_Store
        |       |   ._MaxEntropy_lmax_nofoodg206.dat
        |       |   ._p640e0000001Net00269ens08Data.dat
        |       |   
        |       \---SuperAlive
        |               ._RealTimeSlSgSgm.txt
        |               ._SimTimeAddRem.txt
        |               
        \---Fig9
            |   ._.DS_Store
            |   ._Pap1PlotsExoticMultiple.py
            |   ._SlSgMultExp.gnuplot
            |   
            \---Data
                    ._.DS_Store
                    ._MaxEntropy_lmax_nofoodg206.dat
                    ._P00640eta0100000Net00269ens00008Data.dat