VEP run statistics
| VEP version (API) | 97 (97) |
| Annotation sources | Custom: /scratch.global/pmorrell/Context_of_Mutations/Gmax_275_Wm82.a2.v1.gene_exons_sorted.gff3.gz (overlap) |
| Species | homo_sapiens |
| Command line options | --custom /scratch.global/pmorrell/Context_of_Mutations/Gmax_275_Wm82.a2.v1.gene_exons_sorted.gff3.gz,,gff --fasta /panfs/roc/groups/9/morrellp/shared/References/Reference_Sequences/Soybean/PhytozomeV11/Gmax/assembly/Gmax_275_v2.0.fa --format vcf --gff /scratch.global/pmorrell/Context_of_Mutations/Gmax_275_Wm82.a2.v1.gene_exons_sorted.gff3.gz --input_file /scratch.global/pmorrell/Context_of_Mutations/FN27_de_novo_final_all_sort.vcf.gz --output_file FN27_VeP.txt --verbose --warning_file FN27_vep_err.txt |
| Start time | 2020-01-28 13:36:59 |
| End time | 2020-01-28 13:38:34 |
| Run time | 95 seconds |
| Input file | /scratch.global/pmorrell/Context_of_Mutations/FN27_de_novo_final_all_sort.vcf.gz |
| Output file | FN27_VeP.txt |
General statistics
| Lines of input read | 1756 |
| Variants processed | 1745 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 1264 |
| Overlapped transcripts | 2073 |
| Overlapped regulatory features | - |