This readme.txt file was generated on 20251003 by Vincent Noireaux Recommended citation for the data: Levrier, Antoine; Soudier, Paul; Garenne, David; Izri, Ziane; Bowden, Steven; Lindner, Ariel B; Noireaux, Vincent. (2025). Data supporting 'A synthetic cell phage cycle'. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/hmz3-yf43 ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset: Data supporting A synthetic cell phage cycle 2. Author Information Principal Investigator Contact Information Name: Vincent Noireaux Institution: University of Minnesota Address: 115 Union Street SE, Minneapolis, MN 55455 Email: noireaux@umn.edu ORCID: 0000-0002-5213-273X Associate or Co-investigator Contact Information Name: Ariel Lindner Institution: Sorbonne Université, CNRS, ERL U1338 Inserm Address: Department of Computational, Quantitative and Synthetic Biology, F-75005 Paris, France Email: ariel.lindner@inserm.fr ORCID: 0000-0001-5015-6511 Associate or Co-investigator Contact Information Name: Antoine Levrier Institution: Sorbonne Université, CNRS, ERL U1338 Inserm Address: Department of Computational, Quantitative and Synthetic Biology, F-75005 Paris, France Email: antoine.levrier@learningplanetinstitute.org ORCID: 0009-0002-1649-8328 Associate or Co-investigator Contact Information Name: Paul Soudier Institution: University of Minnesota Email: psoudier@umn.edu ORCID: 0000-0002-6226-2917 Associate or Co-investigator Contact Information Name: David Garenne Institution: University of Minnesota Email: david.garenne@hotmail.fr ORCID: 0009-0004-0997-6226 Associate or Co-investigator Contact Information Name: Ziane Izri Institution: University of Minnesota Email: izri0001@umn.edu ORCID: 0000-0003-4074-1535 Associate or Co-investigator Contact Information Name: Steven Bowden Institution: University of Minnesota Email: sbowden@umn.edu ORCID: 0000-0001-5438-2532 3. Date published or finalized for release: 03 October 2025 4. Date of data collection (single date, range, approximate date): 20230901 - 20250901 5. Geographic location of data collection (where was data collected?): University of Minnesota, Minneapolis, Minnesota, USA 6. Information about funding sources that supported the collection of the data: National Science Foundation (CBET FMRG 2228971) École Doctorale Frontières de l’Innovation en Recherche et Éducation—Programme Bettencourt Bettencourt Schueller Foundation support to Engaged Life Science Department of the Learning Planet Institute Human Frontier Science Program (LT0007/2024-L) Fulbright France 7. Overview of the data (abstract): Viral infection of living cells, exemplified by bacteriophage interaction with bacteria, is fundamental to biology and universal across living systems. Here, we establish an all-cell-free viral cycle where T7 phages infect synthetic cells, equipped with lipopolysaccharides on the outer leaflet of the lipid membrane while encapsulating a cell-free gene expression system. We track each cycle step to demonstrate T7 phage-specific adsorption onto the liposomes, genome ejection, replication, expression, and assembly of new infectious virions within the synthetic cells. We quantify key characteristics of the cycle, including the multiplicity of infection, replication efficiency, liposome size constraints, and phage rebinding dynamics. This work establishes a versatile, fully defined in vitro platform for reconstructing and investigating viral infections from individual molecular components. -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data: CC0 1.0 Universal 2. Links to publications that cite or use the data: Not published yet 3. Was data derived from another source? No If yes, list source(s): 4. Terms of Use: Data Repository for the U of Minnesota (DRUM) By using these files, users agree to the Terms of Use. https://conservancy.umn.edu/pages/policies/#drum-terms-of-use --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: data synthetic cell phage cycle.zip Short description: This repository contains the raw experimental data associated with the publication. Data is organized into three main subfolders: 1. sequencing: contains raw sequencing data of phage genomes used in this study. 2. microscopy: contains raw microscopy image datasets corresponding to the figures in the main text and supplementary information: Main figures: Fig. 2, Fig. 3, Fig. 4 Supplementary figures: Fig. S4–S5, S7–S9, S12, S14–S15, S18–S19, S21, S22, S24, S27–S28, S33–S34, S36 3. SI_movies: contains supplementary movies referenced in the publication: - SI-Split - SI-dCTP - SI-movies - SI-sybr - SI-T7x_infection - SI-holin - SI-serial Notes: - Data is provided in its raw, unprocessed form. - File names correspond to figure numbers and supplementary material labels as referenced in the publication. 2. Relationship between files: none -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: microscopy (phase contrast, fluorescence), next generation sequencing, fluorometry (fluorescence on plate reader), digital photograph using digital device (cell phone), standards methods of molecular biology (DNA assembly) 2. Methods for processing the data: Python (graphs), Benchling (sequencing), MS Excel 3. Instrument- or software-specific information needed to interpret the data: Metamorphosis (microscopy), ImageJ (microscopy) 4. Standards and calibration information, if appropriate: NA 5. Environmental/experimental conditions: aerobic conditions, temperature 29-37C 6. Describe any quality-assurance procedures performed on the data: multiple repeats of the experiments were made 7. People involved with sample collection, processing, analysis and/or submission: all the authors ----------------------------------------- DATA TREE ----------------------------------------- +---microscopy | +---fig S12 | | | BF-11-scale20.jpg | | | BF-14-scale20.jpg | | | BF-17-scale20.jpg | | | green-12-scale20.jpg | | | green-15-scale20.jpg | | | green-18-scale20.jpg | | | green-red-11-12-13.jpg | | | green-red-11-12-13.tif | | | green-red-14-15-16.jpg | | | green-red-14-15-16.tif | | | green-red-17-18-19.jpg | | | green-red-17-181-19.tif | | | nice pics mc cas-TFS outide.tif | | | red-13-scale20.jpg | | | red-16-scale20.jpg | | | red-19-scale20.jpg | | | | | \---tif images | | image_1.tiff | | image_10.tiff | | image_11.tiff | | image_12.tiff | | image_13.tiff | | image_14.tiff | | image_15.tiff | | image_16.tiff | | image_17.tiff | | image_18.tiff | | image_19.tiff | | image_2.tiff | | image_3.tiff | | image_4.tiff | | image_5.tiff | | image_6.tiff | | image_7.tiff | | image_8.tiff | | image_9.tiff | | | +---fig S14 | | splitpics2-0012-50um.jpg | | splitpics2-0012-50um.tif | | splitpics2-0012.tif | | splitpics2-0013-50um.jpg | | splitpics2-0013-50um.tif | | splitpics2-0013.tif | | | +---fig S15 | | | bf-C2-red-10h.tif | | | bf-C2-red-12h.tif | | | bf-C2-red-2h.tif | | | bf-C2-red-4h.tif | | | bf-C2-red-6h.tif | | | bf-C2-red-8h.tif | | | bf-C2-red-t0.tif | | | C1-red-10h.tif | | | C1-red-12h.tif | | | C1-red-2h.tif | | | C1-red-4h.tif | | | C1-red-6h.tif | | | C1-red-8h.tif | | | C1-red-t0.tif | | | | | \---jpeg-scale20 | | bf-C2-red-10h.jpg | | bf-C2-red-12h.jpg | | bf-C2-red-2h.jpg | | bf-C2-red-4h.jpg | | bf-C2-red-6h.jpg | | bf-C2-red-8h.jpg | | bf-C2-red-t0.jpg | | C1-red-10h.jpg | | C1-red-12h.jpg | | C1-red-2h.jpg | | C1-red-4h.jpg | | C1-red-6h.jpg | | C1-red-8h.jpg | | C1-red-t0.jpg | | | +---fig S18 | | Composite.tif | | s10 merge.jpg | | s10-green.jpg | | s10-green.tif | | s10-red-liposomes.jpg | | s10-red-liposomes.tif | | | +---fig S19 | | | a_w1BF Camera_s13_t60.TIF | | | a_w1BF Camera_s1_t60.TIF | | | a_w1BF Camera_s5_t60.TIF | | | a_w1BF Camera_s9_t60.TIF | | | a_w2GFP Camera_s13_t60.TIF | | | a_w2GFP Camera_s1_t60.TIF | | | a_w2GFP Camera_s5_t60.TIF | | | a_w2GFP Camera_s9_t60.TIF | | | a_w3TexRed Camera_s13_t60.TIF | | | a_w3TexRed Camera_s1_t60.TIF | | | a_w3TexRed Camera_s5_t60.TIF | | | a_w3TexRed Camera_s9_t60.TIF | | | serial-bf.tif | | | serial-green.tif | | | serial-red.tif | | | | | \---jpeg | | a_w1BF Camera_s13_t60.jpg | | a_w1BF Camera_s1_t60.jpg | | a_w1BF Camera_s5_t60.jpg | | a_w1BF Camera_s9_t60.jpg | | a_w2GFP Camera_s13_t60.jpg | | a_w2GFP Camera_s1_t60.jpg | | a_w2GFP Camera_s5_t60.jpg | | a_w2GFP Camera_s9_t60.jpg | | a_w3TexRed Camera_s13_t60.jpg | | a_w3TexRed Camera_s1_t60.jpg | | a_w3TexRed Camera_s5_t60.jpg | | a_w3TexRed Camera_s9_t60.jpg | | | +---fig S21 | | | s1-green.tif | | | s1.tif | | | s2-crop-injection-8h.jpg | | | s2-crop-t0.jpg | | | s2-crop.tif | | | s2.tif | | | s3.tif | | | s4-green.tif | | | s4.tif | | | s5-crop-8h.jpg | | | s5-crop-t0.jpg | | | s5-crop.tif | | | s5.tif | | | | | \---SI-scale20 | | s2-t32-uncropped.jpg | | s5-t32-uncropped.jpg | | | +---fig S22 | | green-C2-s28.tif | | red-C1-s28.tif | | t16h-green-C2-s28.jpg | | t16h-red-C1-s28.jpg | | t4h-green-C2-s28.jpg | | t4h-red-C1-s28.jpg | | t6h-green-C2-s28.jpg | | t6h-red-C1-s28.jpg | | | +---fig S24 | | | NC-green-500-1000.tif | | | PC-green-500-1000.tif | | | s1-crop-green.tif | | | s13-green-crop.tif | | | s14-green-crop.tif | | | s15-green-crop.tif | | | s2-crop-green.tif | | | s3-green-crop.tif | | | s7-green-crop.tif | | | s8-green-crop.tif | | | s9-green-crop.tif | | | | | +---jpeg | | | +---s1 | | | | 1-PC-green-500-1000-1.jpg | | | | 10-PC-green-500-1000-1.jpg | | | | 11-PC-green-500-1000-1.jpg | | | | 12-PC-green-500-1000-1.jpg | | | | 13-PC-green-500-1000-1.jpg | | | | 14-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | 5-PC-green-500-1000-1.jpg | | | | 6-PC-green-500-1000-1.jpg | | | | 7-PC-green-500-1000-1.jpg | | | | 8-PC-green-500-1000-1.jpg | | | | 9-PC-green-500-1000-1.jpg | | | | | | | +---s13 | | | | 1-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | | | | +---s14 | | | | 1-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | | | | +---s15 | | | | 1-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | | | | +---s2 | | | | 1-PC-green-500-1000-1.jpg | | | | 10-PC-green-500-1000-1.jpg | | | | 11-PC-green-500-1000-1.jpg | | | | 12-PC-green-500-1000-1.jpg | | | | 13-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | 5-PC-green-500-1000-1.jpg | | | | 6-PC-green-500-1000-1.jpg | | | | 7-PC-green-500-1000-1.jpg | | | | 8-PC-green-500-1000-1.jpg | | | | 9-PC-green-500-1000-1.jpg | | | | | | | +---s3 | | | | 1-PC-green-500-1000-1.jpg | | | | 10-PC-green-500-1000-1.jpg | | | | 11-PC-green-500-1000-1.jpg | | | | 12-PC-green-500-1000-1.jpg | | | | 13-PC-green-500-1000-1.jpg | | | | 14-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | 5-PC-green-500-1000-1.jpg | | | | 6-PC-green-500-1000-1.jpg | | | | 7-PC-green-500-1000-1.jpg | | | | 8-PC-green-500-1000-1.jpg | | | | 9-PC-green-500-1000-1.jpg | | | | | | | +---s7 | | | | 1-PC-green-500-1000-1.jpg | | | | 10-PC-green-500-1000-1.jpg | | | | 11-PC-green-500-1000-1.jpg | | | | 12-PC-green-500-1000-1.jpg | | | | 13-PC-green-500-1000-1.jpg | | | | 14-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | 5-PC-green-500-1000-1.jpg | | | | 6-PC-green-500-1000-1.jpg | | | | 7-PC-green-500-1000-1.jpg | | | | 8-PC-green-500-1000-1.jpg | | | | 9-PC-green-500-1000-1.jpg | | | | | | | +---s8 | | | | 1-PC-green-500-1000-1.jpg | | | | 10-PC-green-500-1000-1.jpg | | | | 11-PC-green-500-1000-1.jpg | | | | 2-PC-green-500-1000-1.jpg | | | | 3-PC-green-500-1000-1.jpg | | | | 4-PC-green-500-1000-1.jpg | | | | 5-PC-green-500-1000-1.jpg | | | | 6-PC-green-500-1000-1.jpg | | | | 7-PC-green-500-1000-1.jpg | | | | 8-PC-green-500-1000-1.jpg | | | | 9-PC-green-500-1000-1.jpg | | | | | | | \---s9 | | | 1-PC-green-500-1000-1.jpg | | | 2-PC-green-500-1000-1.jpg | | | 3-PC-green-500-1000-1.jpg | | | 4-PC-green-500-1000-1.jpg | | | 5-PC-green-500-1000-1.jpg | | | 6-PC-green-500-1000-1.jpg | | | | | \---kinetics examples | | +---s1 | | | 1-t17-PC-green-500-1000-1.jpg | | | 1-t40-PC-green-500-1000-1.jpg | | | 1-t8-PC-green-500-1000-1.jpg | | | 2-t28-PC-green-500-1000-1.jpg | | | 2-t64-PC-green-500-1000-1.jpg | | | 2-t9-PC-green-500-1000-1.jpg | | | 3-t27-PC-green-500-1000-1.jpg | | | 3-t54-PC-green-500-1000-1.jpg | | | 3-t64-PC-green-500-1000-1.jpg | | | 4-t13-PC-green-500-1000-1.jpg | | | 4-t19-PC-green-500-1000-1.jpg | | | 4-t46-PC-green-500-1000-1.jpg | | | s1-1.tif | | | s1-2.tif | | | s1-3.tif | | | s1-4.tif | | | | | +---s14 | | | 1-t23-PC-green-500-1000-1.jpg | | | 1-t41-PC-green-500-1000-1.jpg | | | 1-t7-PC-green-500-1000-1.jpg | | | s14-1.tif | | | | | +---s2 | | | 1-t32-PC-green-500-1000-1.jpg | | | 1-t62-PC-green-500-1000-1.jpg | | | 1-t8-PC-green-500-1000-1.jpg | | | 2-t15-PC-green-500-1000-1.jpg | | | 2-t28-PC-green-500-1000-1.jpg | | | 2-t65-PC-green-500-1000-1.jpg | | | 3-t12-PC-green-500-1000-1.jpg | | | 3-t23-PC-green-500-1000-1.jpg | | | 3-t63-PC-green-500-1000-1.jpg | | | 4-t10-PC-green-500-1000-1.jpg | | | 4-t23-PC-green-500-1000-1.jpg | | | 4-t64-PC-green-500-1000-1.jpg | | | s2-1.tif | | | s2-2.tif | | | s2-3.tif | | | s2-4.tif | | | | | +---s3 | | | 1-t15-PC-green-500-1000-1.jpg | | | 1-t44-PC-green-500-1000-1.jpg | | | 1-t9-PC-green-500-1000-1.jpg | | | 2-t19-PC-green-500-1000-1.jpg | | | 2-t43-PC-green-500-1000-1.jpg | | | 2-t9-PC-green-500-1000-1.jpg | | | 3-t11-PC-green-500-1000-1.jpg | | | 3-t32-PC-green-500-1000-1.jpg | | | 3-t59-PC-green-500-1000-1.jpg | | | s3-1.tif | | | s3-2.tif | | | s3-3.tif | | | | | +---s7 | | | 1-t11-PC-green-500-1000-1.jpg | | | 1-t16-PC-green-500-1000-1.jpg | | | 1-t44-PC-green-500-1000-1.jpg | | | 2-t17-PC-green-500-1000-1.jpg | | | 2-t29-PC-green-500-1000-1.jpg | | | 2-t58-PC-green-500-1000-1.jpg | | | 3-t10-PC-green-500-1000-1.jpg | | | 3-t20-PC-green-500-1000-1.jpg | | | 3-t55-PC-green-500-1000-1.jpg | | | 4-t15-PC-green-500-1000-1.jpg | | | 4-t33-PC-green-500-1000-1.jpg | | | 4-t9-PC-green-500-1000-1.jpg | | | s7-1.tif | | | s7-2.tif | | | s7-3.tif | | | s7-4.tif | | | | | +---s8 | | | 1-t27-PC-green-500-1000-1.jpg | | | 1-t39-PC-green-500-1000-1.jpg | | | 1-t50-PC-green-500-1000-1.jpg | | | 2-t13-PC-green-500-1000-1.jpg | | | 2-t21-PC-green-500-1000-1.jpg | | | 2-t64-PC-green-500-1000-1.jpg | | | 3-t10-PC-green-500-1000-1.jpg | | | 3-t15-PC-green-500-1000-1.jpg | | | 3-t34-PC-green-500-1000-1.jpg | | | 4-t15-PC-green-500-1000-1.jpg | | | 4-t23-PC-green-500-1000-1.jpg | | | 4-t43-PC-green-500-1000-1.jpg | | | 5-t11-PC-green-500-1000-1.jpg | | | 5-t17-PC-green-500-1000-1.jpg | | | 5-t51-PC-green-500-1000-1.jpg | | | s8-1.tif | | | s8-2.tif | | | s8-3.tif | | | s8-4.tif | | | s8-5.tif | | | | | \---s9 | | 1-t15-PC-green-500-1000-1.jpg | | 1-t22-PC-green-500-1000-1.jpg | | 1-t44-PC-green-500-1000-1.jpg | | 2-t11-PC-green-500-1000-1.jpg | | 2-t18-PC-green-500-1000-1.jpg | | 2-t40-PC-green-500-1000-1.jpg | | 3-t18-PC-green-500-1000-1.jpg | | 3-t42-PC-green-500-1000-1.jpg | | 3-t9-PC-green-500-1000-1.jpg | | 4-32-PC-green-500-1000-1.jpg | | 4-t13-PC-green-500-1000-1.jpg | | 4-t57-PC-green-500-1000-1.jpg | | s9-1.tif | | s9-2.tif | | s9-3.tif | | s9-4.tif | | | +---fig S27-S28 | | | s10-1.tif | | | s10-2.tif | | | s10-3.tif | | | s10-4.tif | | | s10-5.tif | | | s19-1.tif | | | s19-2.tif | | | s19-3.tif | | | s20-1.tif | | | s20-2.tif | | | s20-3.tif | | | s9-1.tif | | | s9-2.tif | | | s9-3.tif | | | s9-4.tif | | | s9-5.tif | | | s9-6.tif | | | s9-7.tif | | | ss10-green.tif | | | ss19-green.tif | | | ss20-green.tif | | | ss9-green.tif | | | | | \---jpeg | | 1-t13-a_w2GFP Camera_s20_t13.jpg | | 1-t16-a_w2GFP Camera_s10_t16.jpg | | 1-t17-a_w2GFP Camera_s9_t17.jpg | | 1-t18-a_w2GFP Camera_s19_t18.jpg | | 1-t27-a_w2GFP Camera_s9_t27.jpg | | 1-t28-a_w2GFP Camera_s10_t28.jpg | | 1-t31-a_w2GFP Camera_s19_t31.jpg | | 1-t38-a_w2GFP Camera_s20_t38.jpg | | 1-t44-a_w2GFP Camera_s9_t44.jpg | | 1-t45-a_w2GFP Camera_s10_t45.jpg | | 1-t49-a_w2GFP Camera_s20_t49.jpg | | 1-t56-a_w2GFP Camera_s19_t58.jpg | | 2-t14-a_w2GFP Camera_s20_t14.jpg | | 2-t15-a_w2GFP Camera_s19_t15.jpg | | 2-t22-a_w2GFP Camera_s9_t22.jpg | | 2-t23-a_w2GFP Camera_s20_t23.jpg | | 2-t24-a_w2GFP Camera_s10_t24.jpg | | 2-t28-a_w2GFP Camera_s20_t50.jpg | | 2-t37-a_w2GFP Camera_s10_t37.jpg | | 2-t40-a_w2GFP Camera_s9_t40.jpg | | 2-t49-a_w2GFP Camera_s19_t49.jpg | | 2-t58-a_w2GFP Camera_s9_t60.jpg | | 2-t59-a_w2GFP Camera_s19_t59.jpg | | 2-t64-a_w2GFP Camera_s10_t64.jpg | | 3-t14-a_w2GFP Camera_s19_t14.jpg | | 3-t14-a_w2GFP Camera_s20_t14.jpg | | 3-t19-a_w2GFP Camera_s20_t19.jpg | | 3-t21-a_w2GFP Camera_s9_t21.jpg | | 3-t22-a_w2GFP Camera_s19_t22.jpg | | 3-t25-a_w2GFP Camera_s10_t25.jpg | | 3-t37-a_w2GFP Camera_s20_t37.jpg | | 3-t42-a_w2GFP Camera_s19_t42.jpg | | 3-t43-a_w2GFP Camera_s9_t43.jpg | | 3-t47-a_w2GFP Camera_s10_t47.jpg | | 3-t63-a_w2GFP Camera_s9_t63.jpg | | 3-t64-a_w2GFP Camera_s10_t64.jpg | | 4-t20-a_w2GFP Camera_s10_t20.jpg | | 4-t21-a_w2GFP Camera_s9_t21.jpg | | 4-t28-a_w2GFP Camera_s10_t28.jpg | | 4-t32-a_w2GFP Camera_s9_t32.jpg | | 4-t45-a_w2GFP Camera_s10_t45.jpg | | 4-t52-a_w2GFP Camera_s9_t52.jpg | | 5-t21-a_w2GFP Camera_s9_t21.jpg | | 5-t39-a_w2GFP Camera_s9_t39.jpg | | 5-t48-a_w2GFP Camera_s9_t48.jpg | | 5-t63-a_w2GFP Camera_s9_t63.jpg | | 6-t19-a_w2GFP Camera_s10_t19.jpg | | 6-t20-a_w2GFP Camera_s9_t20.jpg | | 6-t25-a_w2GFP Camera_s9_t25.jpg | | 6-t30-a_w2GFP Camera_s10_t30.jpg | | 6-t54-a_w2GFP Camera_s10_t54.jpg | | 6-t60-a_w2GFP Camera_s9_t60.jpg | | 7-t16-a_w2GFP Camera_s9_t16.jpg | | 7-t22-a_w2GFP Camera_s9_t22.jpg | | 7-t33-a_w2GFP Camera_s9_t33.jpg | | 7-t54-a_w2GFP Camera_s9_t54.jpg | | | +---fig S33 | | s11-bf-t45-dead.jpg | | s11-bf-t6h-dead.jpg | | s11-dead.tif | | s11-red-t45-dead.jpg | | s11-red-t6h-dead.jpg | | s21-bf-t45-T7g.jpg | | s21-bf-t6h-T7g.jpg | | s21-red-t45-T7g.jpg | | s21-red-t6h-T7g.jpg | | s21-T7g.tif | | s27-bf-t45-noLPS.jpg | | s27-bf-t6h-noLPS.jpg | | s27-noLPS.tif | | s27-red-t45-noLPS.jpg | | s27-red-t6h-noLPS.jpg | | s7-bf-t45-CFW.jpg | | s7-bf-t6h-CFW.jpg | | s7-CFW.tif | | s7-red-t45-CFW.jpg | | s7-red-t6h-CFW.jpg | | | +---fig S34 | | | stack auto.ijm | | | | | +---s25 | | | | 1-image_2.tiff.jpg | | | | 10-image_6.tiff.jpg | | | | 11-image_6.tiff.jpg | | | | 12-image_6.tiff.jpg | | | | 13-image_8.tiff.jpg | | | | 14-image_8.tiff.jpg | | | | 15-image_8.tiff.jpg | | | | 16-image_8.tiff.jpg | | | | 17-image_10.tiff.jpg | | | | 18-image_12.tiff.jpg | | | | 19-image_14.tiff.jpg | | | | 2-image_2.tiff.jpg | | | | 20-image_14.tiff.jpg | | | | 22-image_16.tiff.jpg | | | | 23-image_16.tiff.jpg | | | | 24-image_18.tiff.jpg | | | | 25-image_18.tiff.jpg | | | | 26-image_20.tiff.jpg | | | | 27-image_24.tiff.jpg | | | | 3-image_2.tiff.jpg | | | | 30-image_28.tiff.jpg | | | | 31-image_30.tiff.jpg | | | | 32-image_32.tiff.jpg | | | | 4-image_4.tiff.jpg | | | | 5-image_4.tiff.jpg | | | | 6-image_6.tiff.jpg | | | | 7-image_6.tiff.jpg | | | | 8-image_6.tiff.jpg | | | | s25-crop.tif | | | | s25-green.tif | | | | | | | \---pseudo-opti | | | image_1.jpg | | | image_10.jpg | | | image_11.jpg | | | image_12.jpg | | | image_13.jpg | | | image_14.jpg | | | image_15.jpg | | | image_16.jpg | | | image_17.jpg | | | image_18.jpg | | | image_19.jpg | | | image_2.jpg | | | image_20.jpg | | | image_21.jpg | | | image_22.jpg | | | image_23.jpg | | | image_24.jpg | | | image_25.jpg | | | image_26.jpg | | | image_27.jpg | | | image_28.jpg | | | image_3.jpg | | | image_4.jpg | | | image_5.jpg | | | image_6.jpg | | | image_7.jpg | | | image_8.jpg | | | image_9.jpg | | | | | +---s27 | | | | 1.tiff.jpg | | | | 2.tiff.jpg | | | | 3.tiff.jpg | | | | 4.tiff.jpg | | | | 5.tiff.jpg | | | | 6.tiff.jpg | | | | 7.tiff.jpg | | | | 8.tiff.jpg | | | | 9.tiff.jpg | | | | s27-crop.tif | | | | s27.tif | | | | | | | \---pseudo-opti | | | image_1.jpg | | | image_2.jpg | | | image_3.jpg | | | image_4.jpg | | | image_5.jpg | | | image_6.jpg | | | image_7.jpg | | | image_8.jpg | | | image_9.jpg | | | | | +---s29 | | | | 1.tiff.jpg | | | | 10.tiff.jpg | | | | 11.tiff.jpg | | | | 12.tiff.jpg | | | | 13.tiff.jpg | | | | 14.tiff.jpg | | | | 15.tiff.jpg | | | | 16.tiff.jpg | | | | 17.tiff.jpg | | | | 18.tiff.jpg | | | | 19.tiff.jpg | | | | 2.tiff.jpg | | | | 20.tiff.jpg | | | | 21.tiff.jpg | | | | 22.tiff.jpg | | | | 23.tiff.jpg | | | | 3.tiff.jpg | | | | 4.tiff.jpg | | | | 5.tiff.jpg | | | | 6.tiff.jpg | | | | 7.tiff.jpg | | | | 8.tiff.jpg | | | | 9.tiff.jpg | | | | s29-crop.tif | | | | s29-green.tif | | | | | | | \---pseudo-opti | | | image_1.jpg | | | image_10.jpg | | | image_11.jpg | | | image_12.jpg | | | image_13.jpg | | | image_14.jpg | | | image_15.jpg | | | image_16.jpg | | | image_17.jpg | | | image_18.jpg | | | image_19.jpg | | | image_2.jpg | | | image_20.jpg | | | image_21.jpg | | | image_22.jpg | | | image_23.jpg | | | image_24.jpg | | | image_3.jpg | | | image_4.jpg | | | image_5.jpg | | | image_6.jpg | | | image_7.jpg | | | image_8.jpg | | | image_9.jpg | | | | | \---s31 | | | 1-image_2.tiff.jpg | | | 10-image_10.tiff.jpg | | | 11-image_12.tiff.jpg | | | 12-image_12.tiff.jpg | | | 13-image_12.tiff.jpg | | | 14-image_12.tiff.jpg | | | 15-image_14.tiff.jpg | | | 16-image_14.tiff.jpg | | | 17-image_16.tiff.jpg | | | 18-image_16.tiff.jpg | | | 19-image_18.tiff.jpg | | | 2-image_2.tiff.jpg | | | 20image_18.tiff.jpg | | | 21-image_18.tiff.jpg | | | 22-image_20.tiff.jpg | | | 23-image_20.tiff.jpg | | | 25-image_22.tiff.jpg | | | 26-image_22.tiff.jpg | | | 27-image_22.tiff.jpg | | | 28-image_22.tiff.jpg | | | 29-image_24.tiff.jpg | | | 3-image_2.tiff.jpg | | | 30-image_24.tiff.jpg | | | 4-image_4.tiff.jpg | | | 5-image_6.tiff.jpg | | | 6-image_6.tiff.jpg | | | 7-image_6.tiff.jpg | | | 8-image_6.tiff.jpg | | | 9-image_10.tiff.jpg | | | s31-crop.tif | | | s31-green.tif | | | | | \---pseudo-opti | | image_1.jpg | | image_10.jpg | | image_11.jpg | | image_12.jpg | | image_13.jpg | | image_14.jpg | | image_15.jpg | | image_16.jpg | | image_17.jpg | | image_18.jpg | | image_19.jpg | | image_2.jpg | | image_20.jpg | | image_21.jpg | | image_22.jpg | | image_23.jpg | | image_24.jpg | | image_25.jpg | | image_26.jpg | | image_27.jpg | | image_28.jpg | | image_29.jpg | | image_3.jpg | | image_4.jpg | | image_5.jpg | | image_6.jpg | | image_7.jpg | | image_8.jpg | | image_9.jpg | | | +---fig S36 | | +---CFW red | | | | image_10.tiff | | | | image_10.tiff.jpg | | | | image_2.tiff | | | | image_2.tiff.jpg | | | | image_4.tiff | | | | image_4.tiff.jpg | | | | SI-Composite.jpg | | | | | | | \---bf | | | image_1.tiff | | | image_1.tiff.jpg | | | image_3.tiff | | | image_3.tiff.jpg | | | image_9.tiff | | | image_9.tiff.jpg | | | | | +---crispr grna red | | | | image_10.tiff | | | | image_10.tiff.jpg | | | | image_2.tiff | | | | image_2.tiff.jpg | | | | image_4.tiff | | | | image_4.tiff.jpg | | | | SI-Composite.jpg | | | | | | | \---bf | | | image_1.tiff | | | image_1.tiff.jpg | | | image_3.tiff | | | image_3.tiff.jpg | | | image_9.tiff | | | image_9.tiff.jpg | | | | | \---crispr only red | | image_18.tiff | | image_20.tiff | | image_8.tiff | | | +---fig S4-S5 | | +---LPS only | | | | s11-bf.jpg | | | | s11-green.jpg | | | | s3-bf.jpg | | | | s3-green.jpg | | | | s3-s7-s11-bf.tif | | | | s3-s7-s11-green.tif | | | | s7-bf.jpg | | | | s7-green.jpg | | | | | | | \---TF WT more pictures | | | s5s8-green scale20.tif | | | s5s8-scale20-bf.tif | | | s6s2-scale20-bf.jpg | | | s6t2-2137-green scale20.jpg | | | s7t1-4536-green scale20.jpg | | | s7t1-scale20-bf.jpg | | | s8t2-5136-green scale20.jpg | | | s8t2-scale20-bf.jpg | | | | | +---mix pop | | | s13-scale20-bf.jpg | | | s13-scale20-green.jpg | | | s13-scale20-red.jpg | | | s2-scale20-bf.jpg | | | s2-scale20-green.jpg | | | s2-scale20-red.jpg | | | s2s13-scale20-bf.tif | | | s2s13-scale20-green.tif | | | s2s13-scale20-red.tif | | | s6-scale20-bf.jpg | | | s6-scale20-green.jpg | | | s6-scale20-red.jpg | | | | | \---no LPS only | | adjusted-s10t13-6104.jpg | | adjusted-s14t13-5547.jpg | | adjusted-s5t13-5690.jpg | | corresponding-scale20-green.tif | | s10s13-scale20-bf.jpg | | s10s2-scale20-bf.jpg | | s10t13-6104-scale20-green.jpg | | s10t2-8024-scale20-green.jpg | | s14s13-scale20-bf.jpg | | s14t13-5547-scale20-green.jpg | | s15s13-scale20-bf.jpg | | s15t13-5386-scale20-green.jpg | | s2s13-scale20-bf.tif | | s4t2-5588-scale20-green.jpg | | s4t2-scale20-bf.jpg | | s5s13-scale20-bf.jpg | | s5t13-5690-scale20-green.jpg | | | +---fig S7 | | bf-100x-mix.jpg | | bf-100x-mix2.jpg | | bf-100x-scale10-1.jpg | | bf-100x-scale10-2.jpg | | bf-100x-scale10-3.jpg | | bf-100x-scale10-4.jpg | | bf-100x-scale10-5.jpg | | bf-100x-scale10-xxx.jpg | | bf-100x-small.jpg | | bf-100x-verysmall.jpg | | bf-20x-scale20.jpg | | bf-40x-scale20.jpg | | green-100x-1.jpg | | green-100x-2.jpg | | green-100x-3.jpg | | green-100x-4-1.jpg | | green-100x-4-2.jpg | | green-100x-5.jpg | | green-100x-mix.jpg | | green-100x-mix2.jpg | | green-100x-small.jpg | | green-100x-verysmall.jpg | | green-100x-xxx.jpg | | green-20x-scale20.jpg | | green-40x-scale20.jpg | | nice pictures 20xph - 40x Ph - 100x DIC TFS.tif | | | +---fig S8 | | +---kinetics TFS 100x | | | green-t0-t10.tif | | | green-t0.jpg | | | green-t1.jpg | | | green-t10.jpg | | | green-t2.jpg | | | green-t3.jpg | | | green-t4.jpg | | | green-t5.jpg | | | green-t6.jpg | | | green-t7.jpg | | | green-t8.jpg | | | green-t9.jpg | | | image stack.tif | | | red-t0-t10.tif | | | red-t0.jpg | | | red-t1.jpg | | | red-t10.jpg | | | red-t11.jpg | | | red-t2.jpg | | | red-t3.jpg | | | red-t4.jpg | | | red-t5.jpg | | | red-t6.jpg | | | red-t7.jpg | | | red-t8.jpg | | | red-t9.jpg | | | timelapse-5umscale-bf-t0.tif | | | timelapse-5umscale-bf-t1.tif | | | timelapse-5umscale-bf-t10.tif | | | timelapse-5umscale-bf-t2.tif | | | timelapse-5umscale-bf-t3.tif | | | timelapse-5umscale-bf-t4.tif | | | timelapse-5umscale-bf-t5.tif | | | timelapse-5umscale-bf-t6.tif | | | timelapse-5umscale-bf-t7.tif | | | timelapse-5umscale-bf-t8.tif | | | timelapse-5umscale-bf-t9.tif | | | timelapse-5umscale-green-t0.tif | | | timelapse-5umscale-green-t1.tif | | | timelapse-5umscale-green-t10.tif | | | timelapse-5umscale-green-t2.tif | | | timelapse-5umscale-green-t3.tif | | | timelapse-5umscale-green-t4.tif | | | timelapse-5umscale-green-t5.tif | | | timelapse-5umscale-green-t6.tif | | | timelapse-5umscale-green-t7.tif | | | timelapse-5umscale-green-t8.tif | | | timelapse-5umscale-green-t9.tif | | | timelapse-5umscale-red-t0.tif | | | timelapse-5umscale-red-t1.tif | | | timelapse-5umscale-red-t10.tif | | | timelapse-5umscale-red-t2.tif | | | timelapse-5umscale-red-t3.tif | | | timelapse-5umscale-red-t4.tif | | | timelapse-5umscale-red-t5.tif | | | timelapse-5umscale-red-t6.tif | | | timelapse-5umscale-red-t7.tif | | | timelapse-5umscale-red-t8.tif | | | timelapse-5umscale-red-t9.tif | | | timelapse-bf-t0.jpg | | | timelapse-bf-t1.jpg | | | timelapse-bf-t10.jpg | | | timelapse-bf-t2.jpg | | | timelapse-bf-t3.jpg | | | timelapse-bf-t4.jpg | | | timelapse-bf-t5.jpg | | | timelapse-bf-t6.jpg | | | timelapse-bf-t7.jpg | | | timelapse-bf-t8.jpg | | | timelapse-bf-t9.jpg | | | timelapse-green-t0.jpg | | | timelapse-green-t1.jpg | | | timelapse-green-t10.jpg | | | timelapse-green-t2.jpg | | | timelapse-green-t3.jpg | | | timelapse-green-t4.jpg | | | timelapse-green-t5.jpg | | | timelapse-green-t6.jpg | | | timelapse-green-t7.jpg | | | timelapse-green-t8.jpg | | | timelapse-green-t9.jpg | | | timelapse-red-t0.jpg | | | timelapse-red-t1.jpg | | | timelapse-red-t10.jpg | | | timelapse-red-t2.jpg | | | timelapse-red-t3.jpg | | | timelapse-red-t4.jpg | | | timelapse-red-t5.jpg | | | timelapse-red-t6.jpg | | | timelapse-red-t7.jpg | | | timelapse-red-t8.jpg | | | timelapse-red-t9.jpg | | | | | \---kinetics TFS 20x | | bf-t0-TFS-kinetics-20x-scale20.jpg | | bf-t1-TFS-kinetics-20x-scale20.jpg | | bf-t2-TFS-kinetics-20x-scale20.jpg | | bf-t3-TFS-kinetics-20x-scale20.jpg | | green-t0-TFS-kinetics-20x-scale20.jpg | | green-t1-TFS-kinetics-20x-scale20.jpg | | green-t2-TFS-kinetics-20x-scale20.jpg | | green-t3-TFS-kinetics-20x-scale20.jpg | | red-t0-TFS-kinetics-20x-scale20.jpg | | red-t1-TFS-kinetics-20x-scale20.jpg | | red-t2-TFS-kinetics-20x-scale20.jpg | | red-t3-TFS-kinetics-20x-scale20.jpg | | TFS-kinetics-20x-scale20.tif | | | +---fig S9 | | TFin-crop-bf.jpg | | TFin-crop-green.jpg | | TFin-crop.tif | | TFin-noPPE-crop-bf.jpg | | TFin-noPPE-crop-green.jpg | | TFin-noPPE-crop.tif | | TFin-noPPE.tif | | TFin.tif | | TFout-crop-bf.jpg | | TFout-crop-green.jpg | | TFout-crop.tif | | TFout-noPPE-crop-bf.jpg | | TFout-noPPE-crop-green.jpg | | TFout-noPPE-crop.tif | | TFout-noPPE.tif | | TFout.tif | | | +---main fig 4 | | s27-crop-25um scale bar.tif | | s27-crop-green-t20.jpg | | s27-crop-green-t27.jpg | | s27-crop-green-t32.jpg | | s27-crop-green-t39.jpg | | s27-crop-green-t4.jpg | | s27-crop-green-t42.jpg | | s27-crop-green-t66.jpg | | s27-crop-green-t80.jpg | | s27-crop-t20.jpg | | s27-crop-t27.jpg | | s27-crop-t32.jpg | | s27-crop-t39.jpg | | s27-crop-t4.jpg | | s27-crop-t42.jpg | | s27-crop-t66.jpg | | s27-crop-t80.jpg | | s27.tif | | | +---main fig2 | | | fig 1.G-bf.jpg | | | fig 1.G-crop-scale20.jpg | | | fig 1.G-green.jpg | | | fig 1.G.tif | | | fig1.E crop-scale20.jpg | | | fig1.E-scale20.jpg | | | fig1.E.tif | | | fig1.F-crop-20x.jpg | | | fig1.F-crop2.jpg | | | fig1.F.jpg | | | fig1.F.tif | | | fig1.G-combined.jpg | | | fig1.G-combined.tif | | | | | \---fig2E | | split-a-bf.jpg | | split-a-composite.tif | | split-a-green.jpg | | split-a10-bf.jpg | | split-a10-composite.tif | | split-a10-green.jpg | | split-a3-bf.jpg | | split-a3-composite.tif | | split-a3-green.jpg | | split-a6-bf.jpg | | split-a6-composite.tif | | split-a6-green.jpg | | | \---main fig3 | +---fig3B | | red-10h.jpg | | red-10h.tif | | red-4h-scale40.jpg | | red-4h.tif | | red-8h.jpg | | red-8h.tif | | red-crop-t0.jpg | | red-crop-t15.jpg | | red-crop-t30.jpg | | red-crop-t45.jpg | | red-crop-t60.jpg | | red-crop-t75.jpg | | red-crop.tif | | red-t0.jpg | | red-t0.tif | | | +---fig3C | | | bf-1.jpg | | | bf-1.tif | | | bf-2.jpg | | | bf-3.jpg | | | bf-4.jpg | | | bf-5.jpg | | | bf-6.jpg | | | bf-7.jpg | | | bf-8.jpg | | | bf-9.jpg | | | gfp-1.jpg | | | gfp-2.jpg | | | gfp-3.jpg | | | gfp-4.jpg | | | gfp-5.jpg | | | gfp-6.jpg | | | gfp-7.jpg | | | gfp-8.jpg | | | gfp-9.jpg | | | red-1.jpg | | | red-2.jpg | | | red-3.jpg | | | red-4-2.jpg | | | red-4.jpg | | | red-5.jpg | | | red-6.jpg | | | red-7.jpg | | | red-8.jpg | | | red-9.jpg | | | | | \---100x T7mC infection | | avi s5 T7mC.tif | | avi-0001-red.jpg | | avi-0003-bf.jpg | | avi-0010-red.jpg | | avi-0011-bf.jpg | | avi-0012-red.jpg | | avi-0013-bf.jpg | | avi-0014-red-10umscale.jpg | | avi-0015-bf-10umscale.jpg | | | +---fig3E | | s1-crop.jpg | | s1-crop600.jpg | | s1-crop600.tif | | s1.tif | | s13-crop.jpg | | s13-crop600-scale25.jpg | | s13-crop600.tif | | s13.tif | | s2-crop600-scale 25.jpg | | s2-crop600.tif | | s5-crop.jpg | | s5-crop600.jpg | | s5-crop600.tif | | s5.tif | | s9-crop.jpg | | s9-crop600.jpg | | s9-crop600.tif | | s9.tif | | | +---fig3H | | s2-crop-240-310-t32-scale20.jpg | | s2-crop-240-310-t32-scale20.tif | | s28-crop-140-s17-noscale.jpg | | s28-crop-140-s26-noscale.jpg | | s28-crop-140-s80-noscale.jpg | | s28-crop-140-t0-scale20.jpg | | s28-crop-140-t1-scale20.jpg | | s28-crop-140-t2-scale20.jpg | | s28-crop-140.tif | | s5-crop-240-310-t32-scale20.jpg | | s5-crop-240-310-t32-scale20.tif | | | \---fig3J | NC-NTP-7-t49-SB-240-310-scale20.jpg | NC-NTP-7-t49-SB-240-310-scale20.tif | NC-NTP-7-t49-SB.tif | PC-NTP-10-t49-SB-240-310-scale20.jpg | PC-NTP-10-t49-SB-240-310-scale20.tif | PC-NTP-10-t49-SB.tif | s15-crop-140-s25-noscale.jpg | s15-crop-140-s39-noscale.jpg | s15-crop-140-s81-noscale.jpg | s15-crop-140-t0-scale20.jpg | s15-crop-140-t1-scale20.jpg | s15-crop-140-t2-scale20.jpg | s15-crop-140.tif | +---sequencing | \---ZFNLQL_results | | ZFNLQL_gel.png | | | +---ZFNLQL_ab1-files | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.1-of-5.ab1 | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.2-of-5.ab1 | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.3-of-5.ab1 | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.4-of-5.ab1 | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.5-of-5.ab1 | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.1-of-5.ab1 | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.2-of-5.ab1 | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.3-of-5.ab1 | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.4-of-5.ab1 | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.5-of-5.ab1 | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.1-of-5.ab1 | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.2-of-5.ab1 | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.3-of-5.ab1 | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.4-of-5.ab1 | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.5-of-5.ab1 | | | +---ZFNLQL_coverage-plots | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.png | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.png | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.png | | | +---ZFNLQL_fasta-files | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.fasta | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.fasta | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.fasta | | | +---ZFNLQL_genbank-files | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.gbk | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.gbk | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.gbk | | | +---ZFNLQL_histograms | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.png | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.png | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.png | | | +---ZFNLQL_interactive-map | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.html | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.html | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.html | | | +---ZFNLQL_per-base-data | | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.tsv | | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.tsv | | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.tsv | | | \---ZFNLQL_summary-files | ZFNLQL_1_T7_YFP_Linear_PCR_Big_Purified.txt | ZFNLQL_2_T7_GFP_Linear_PCR_Big_Purified.txt | ZFNLQL_3_T7_SPLIT_Linear_PCR_Big_Purified.txt | \---SI movies +---SI-dCTP | | s9-s7-scale50.avi | | s9-s7-scale50.tif | | s9-s7.avi | | s9-s7.tif | | | \---photobleaching | green_s9-before.jpg | green_s9-end.jpg | green_s9-starting.jpg | green_s9-workingdoc-0.jpg | green_s9-workingdoc-1.jpg | green_s9-workingdoc-2.jpg | green_s9-workingdoc.tif | green_s9.tif | +---SI-holin | add-lines.ijm | holin movie.tif | s1-s7-s13-s20.tif | +---SI-movies | | movie-s1.avi | | movie-s2.avi | | movie-s3.avi | | movie-s4.avi | | movie-s5.avi | | movie-s6.avi | | | \---archived | SI-movie-1.avi | SI-movie-2.avi | SI-movie-3.avi | SI-movie-4.avi | +---SI-serial | serial-s1-s5-s9-s13-scale50.avi | serial-s1-s5-s9-s13.avi | serial-s1-s5-s9-s13.tif | +---SI-Split | | s25-s27.avi | | s25-s27.tif | | | \---photobleaching | s27-2.csv | s27-plot-2.jpg | s27-plot.jpg | s27.csv | +---SI-sybr | s9-s10-scale50.avi | s9-s10-scale50.tif | \---SI-T7x_infection s1-s4-s7-s10-scale50.avi s1-s4-s7-s10.avi s1-s4-s7-s10.tif