This readme.txt file was generated on 20250422 by Jacob Pacheco Recommended citation for the data: ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset “Identification of genetic variation associated with high-temperature tolerance in cowpea” 2. Author Information Principal Investigator Contact Information Name: Roland Akakpo Institution: University of Minnesota Address: University of Minnesota Department of Agronomy and Plant Genetics Email: drolanda@umn.edu ORCID: 0000-0002-6445-6993 Principal Investigator Contact Information Name: Peter L Morrell Institution: University of Minnesota Address: University of Minnesota Department of Agronomy and Plant Genetics Email: pmorrell@umn.edu ORCID: 0000-0001-6282-1582 Associate or Co-investigator Contact Information Name: Elaine J Lee Institution: University of Minnesota Address: University of Minnesota Department of Agronomy and Plant Genetics Email: ee02326@umn.edu ORCID: 0000-0002-7187-0068 Associate or Co-investigator Contact Information Name: Jacob pacheco Institution: University of Minnesota Address: University of Minnesota Department of Agronomy and Plant Genetics Email: Pache105@umn.edu ORCID: 0009-0000-8678-8465 Associate or Co-investigator Contact Information Name: Esteban F Rios Institution: University of Florida Address: University of Florida, Gainesville Department of Agronomy and Plant Genetics Email: estebanrios@ufl.edu ORCID: 0009-0000-8678-8465 Associate or Co-investigator Contact Information Name: Michael B Kantar Institution: University of Hawaii Address: University of Hawaii Department of Tropical Plant & Soil Sciences Email: mbkantar@hawaii.edu ORCID: 0000-0001-5542-0975 Associate or Co-investigator Contact Information Name: Ousmane Boukar Institution: International Institute of Tropical Agriculture Address: International Institute of Tropical Agriculture, Kano, Nigeria Email: o.boukar@cgiar.org ORCID: 0000-0003-0234-4264 Associate or Co-investigator Contact Information Name: Kevin Michael Volz Institution: David Volz Design Address: David Volz Design, 151 Kalmus Drive Suite M8, Costa Mesa, CA 92626 Email: kevvolz@gmail.com ORCID: 0009-0006-3617-8662 Associate or Co-investigator Contact Information Name: Habib Akinmade Institution: University of Florida department of plant Breeding Address: Plant Breeding Graduate Program, University of Florida, Gainesville, FL 32611 Email: akinmade.habib@ufl.edu ORCID: 0000-0002-1178-2971 Associate or Co-investigator Contact Information Name: Luis Getino Alonso Institution: Universidad de León Departamento de Biología Molecular Address: Departamento de Biología Molecular, Universidad de León, 24071 León, Spain Email: lgeta@unileon.es ORCID: 0000-0001-7924-1621 Associate or Co-investigator Contact Information Name: Kenneth Boote Institution: University of Florida Address: University of Florida, Gainesville Department of Agricultural and Biological Engineering Email: kjboote@ufl.edu ORCID: 0000-0002-1358-5496 Associate or Co-investigator Contact Information Name: María Muñoz-Amatriaín Institution: Universidad de León Departamento de Biología Molecular Address: Departamento de Biología Molecular, Universidad de León, 24071 León, Spain Email: mmuna@unileon.es ORCID: 0000-0002-4476-1691 3. Date published or finalized for release: 4/15/2025 4. Date of data collection (single date, range, approximate date) : 20200101–20231231 5. Geographic location of data collection (where was data collected?): IITA Ibadan - Nigeria 6. Information about funding sources that supported the collection of the data: This study was funded by the Foundation for Food & Agriculture Research (Award# ICRC20-0000000032) to EFR, KJB, MA-M, OB, and PLM. The authors thank Tchamba Marimagne (IITA Genebank, Nigeria) for his valuable input during passport data curation, and Fiona Todd (University of Minnesota, USA) for the curation of materials associated with the manuscript. This research was carried out with software and hardware support provided by the Minnesota Supercomputing Institute (MSI) at the University of Minnesota. This research benefited from the advice and guidance of Timothy J. Close (U. of California Riverside, USA). 7. Overview of the data (abstract): This dataset includes filtered and unfiltered variant call files (VCFs), structural variant data (BEDPE), callable and uncallable region masks (BED), and phenotype data collected from mutagenized barley lines and control hybrids. It incorporates sequencing results from 10x Genomics, Oxford Nanopore, PacBio, and Illumina platforms. -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data: Subject to DRUM Terms of Use 2. Links to publications that cite or use the data: https://doi.org/10.1101/2025.04.09.647789 3. Was data derived from another source? Yes 4. Terms of Use: Data Repository for the U of Minnesota (DRUM) By using these files, users agree to the Terms of Use. https://conservancy.umn.edu/pages/policies/#drum-terms-of-use --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: Cowpea_enviormental_ancest_822 Short description: Dataset related to environmental ancestry analysis in cowpea lines. B. Filename: IITA_cowpea_core_PP_data_test.kml **** Short description: Geographic sampling locations for IITA cowpea core accessions, in KML format. C. Filename: Partner_Favorites.vcf.gz Short description: VCF file of variants from selected partner-preferred cowpea lines. D. Filename: README.md Short description: Markdown-formatted readme containing project metadata and notes. E. Filename: README_WIP_Roland_Cowpea.txt Short description: In-progress readme draft with additional annotation and format testing notes. F. Filename: Readme_published_V5.txt Short description: Final published version of the project readme with all required metadata. G. Filename: VIGNA_rate6_ANCEST.bed Short description: Ancestral state inference output using rate6 model in BED format. H. Filename: VIGNA_rate6_ANCEST_ESTSFS.bed Short description: BED file with ancestral states inferred using EST-SFS for comparison. I. Filename: all_hits_MAF 3.bed.numbers Short description: BED file annotated with allele frequency hit counts. J. Filename: cowpea_490_stats_AA_rename.vcf.gz Short description: VCF file with ancestral allele statistics for 490 cowpea samples. K. Filename: cowpea_490_stats_AA_rename.vcf.gz.csi Short description: Index file for the cowpea_490_stats_AA_rename VCF. L. Filename: iSelect_ancestral.bed Short description: Ancestral state calls for iSelect SNP array loci in BED format.