epiSNP Software

Ma, Li
Runesha, Hakizumwami Birali
Dvorkin, Daniel
Garbe, John
Da, Yang
2012-02-06
Thumbnail Image

View/Download File

episnp_manual_v4-2.pdf (232.98 KB)
 episnpmpi_2-0_voltaire_suse_em64t.tar.gz (788.09 KB)
 episnpmpi_v2-0_ibm_aix_pwr.tar.gz (149.81 KB)
 episnpmpi_v4-2.zip (5.78 MB)
 episnpmpi_2-0_intelmpi_suse_amd.tar.gz (726.16 KB)

Persistent link to this item

https://hdl.handle.net/11299/276220
Statistics
View Statistics

Title

epiSNP Software

Authors

Published Date

2012-02-06

Publisher

Type

Other

Abstract

epiSNP is a computer package of serial computing programs for genome-wide testing of SNP epistasis and single-locus effects of complex or quantitative traits.

Keywords

Description

Version 4.2, 09/16/2011, updated 02/06/2012. Available for Windows and Linux for several compilers and processors: -Windows Operating system, Intel Compiler, Intel/AMD Processor: epiSNP_v4.2_Windows.zip (5.8 MB) -Irix Operating system, SGI Compiler, MIPS Processor: epiSNP_2.0_SGI_Irix_Mips.tar.gz (1.21 MB) -Linux (SUSE) Operating system, Intel Compiler, AMD Processor: epiSNP_2.0_intel_suse_AMD.tar.gz (2.85 MB) -Linux (SUSE) Operating system, Intel Compiler, Intel (EM64T) Processor: epiSNP_2.0_intel_suse_EM64T.tar.gz (1.96 MB) -Linux Operating system, Portland Compiler, Intel (32 bit) Processor: epiSNP_2.0_Portland_Linux_Intel.tar.gz (491 kB) -Linux (SUSE) Operating system, Pathscale Compiler, AMD Processor: epiSNP_2.0_Pathscale_suse_AMD.tar.gz (1.21 MB) -Unix (AIX) Operating system, XLF Compiler, Power4 Processor: epiSNP_2.0_xlf_AIX_Power.tar (820 kB) -Unix (Solaris) Operating system, SUN Compiler, SPARC Processor: epiSNP_2.0_Sun_Solaris_Sparc.tar.gz (1.92 MB) The file epiSNP_v4.2_Windows.zip (5.8 MB) has four executable for Windows: EPINET, CPUHD, EPISNPPLOT, and EPINET. Each of the other files has two executables: EPINET and CPUHD. Output files of EPISNP running on Linux or Unix system can be used for EPISNPPLOT and EPINET on a Windows computer.

Related to

item.page.replaces

License

Collections

Software Tools for Animal Gene Mapping and Genomic Selection

Series/Report Number

Funding Information

item.page.isbn

DOI identifier

Previously Published Citation

Ma L., H.B. Runesha, D. Dvorkin, J.R. Garbe, and Y. Da. (2008) Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies. BMC Bioinformatics 9:315. Article URL: www.biomedcentral.com/1471-2105/9/315.

Other identifiers

Suggested Citation

Ma, Li; Runesha, Hakizumwami Birali; Dvorkin, Daniel; Garbe, John; Da, Yang. (2012). epiSNP Software. Retrieved from the University Digital Conservancy, https://hdl.handle.net/11299/276220.

Content distributed via the University Digital Conservancy may be subject to additional license and use restrictions applied by the depositor. By using these files, users agree to the Terms of Use. Materials in the UDC may contain content that is disturbing and/or harmful. For more information, please see our statement on harmful content in digital repositories.