Supporting data for American highbush cranberry maintains strong population structure despite naturalization of Eurasian relatives in North America
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2022-05-01
2024-04-30
2024-04-30
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2025-06-18
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Tork, David
torkx001@umn.edu
torkx001@umn.edu
Abstract
This study examines the genetic structure of the Opulus clade of Viburnum using genome-wide SNP markers. It highlights the introduction and spread of the Eurasian taxa V. opulus and V. sargentii in North America, and explores the consequences for the conservation of the native V. trilobum.
Description
This dataset includes data and scripts necessary to recreate Figures 2-7, Tables 1-4, and Appendices S2-S8 from the manuscript. This dataset is released in accordance with AJB’s Data Availability policy. The ‘File Information’ section lists: 1) the R scripts (.Rmd files) used in this study, in the order that they were executed; 2) input files including genotyping (DArTseq) data, metadata associated with the plant collections, and all other files necessary for executing the R scripts; and 3) file that are generated as a result of R script execution, many of which become inputs for subsequent R scripts. The ‘Data Processing Methods’ section describes the inputs and outputs of each R script. The section ‘Description of METADATA’ describes the content of .csv files containing metadata critical to the analyses.
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Attribution-NonCommercial 4.0 International
http://creativecommons.org/licenses/by-nc/4.0/
http://creativecommons.org/licenses/by-nc/4.0/
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Funding Information
2021 Minnesota Department of Agriculture Specialty Crop Block Grant Award # 21SCBPMN1006
University of Minnesota Office of Technology Commercialization 2022 Early Innovation Fund #2023-127
Minnesota Agricultural Experiment Station (MAES Project No. MIN-21-108)
University of Minnesota Office of Technology Commercialization 2022 Early Innovation Fund #2023-127
Minnesota Agricultural Experiment Station (MAES Project No. MIN-21-108)
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Tork, David G; Anderson, Neil O; Brusa, Anthony; Smith, Alan G. (2025). Supporting data for American highbush cranberry maintains strong population structure despite naturalization of Eurasian relatives in North America. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/r0mc-cq97.
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README.txt
Readme documentation file
(15.97 KB)
01_Import-Filtering.html
Import and filter data, export files for Structure and Splitstree
(1.25 MB)
02_PCA-ReportedID.html
Run PCA, exports Appendix S2 plot
(1.76 MB)
03_STRUCTURE-All.html
Import Structure analysis, export Appendix S3 and Figure 2
(833.98 KB)
04_STRUCTURE-Pairs.html
Import pairwise Structure results, export Appendix S4
(1.34 MB)
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