Data in support of: Scalable Detection of Aquatic Invasive Species Across Landscapes Using eDNA and Community Science

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2023-06-30
2023-07-13

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2025-11-11

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Hansen, Gretchen
ghansen@umn.edu

Abstract

Opportunistic sampling to detect aquatic invasive species (AIS) often biases the number of lakes known to be invaded. Environmental DNA (eDNA) assays provide a powerful alternative by filtering water and amplifying DNA from target organisms. The relatively low cost and effort of eDNA sampling make it a scalable solution for AIS monitoring. Moreover, the low-intensity collection process allows broad participation, including non-scientific volunteers. We developed off-the-shelf eDNA sampling kits that can be mailed to volunteers. Samples collected by volunteers were compared with those collected by research professionals to evaluate detection ability and contamination rates. Volunteer-based sampling proved as effective as professional sampling, achieving comparable detection and low contamination rates. This data product includes eDNA detection results for 4 common invasive species to the state of Minnesota for 10 lakes. Analysis scripts found in the documented GitHub repository visualize data, showing the effectiveness of community partners in eDNA sample collection and avoidance of contamination. Our results demonstrate that these kits can be scaled beyond our initial 100 volunteers, demonstrating that large-scale, volunteer-driven eDNA monitoring is feasible and effective.

Description

We collected environmental DNA (eDNA) samples from ten lakes originally sampled by Rounds et al. (2024), each with at least one target species detected: common carp (Cyprinus carpio), rusty crayfish (Faxonius rusticus), spiny waterflea (Bythotrephes longimanus), and zebra mussel (Dreissena polymorpha). Between June 30 and July 9, 2023, trained community volunteers collected ten water samples per lake, primarily from a variety of locations within a lake. Volunteers received standardized training and sampling kits containing bottles, Smith-Root eDNA filter packs, gloves, datasheets, and prepaid mailers; one randomly assigned kit per lake included a field blank (deionized water). Filters were sealed and returned for laboratory analysis. DNA extraction and quantitative PCR (qPCR) followed Rounds et al. (2024), with samples processed at the University of Minnesota’s Natural Resources Research Institute or the University of Illinois, laboratories previously shown to yield concordant results. DNA was extracted using Qiagen DNEasy PowerSoil Pro Kits with standard contamination controls, and species-specific qPCR assays were performed in triplicate using established protocols and synthetic DNA standards to generate calibration curves. Please reference the readme and referenced manuscript for more detailed information.

Referenced by

Blechinger, T., D. Link, E.R. Larson, S.M. García, C.L. Chun, K. Edblad, M.R. Verhoeven, G.J.A. Hansen. 2025. Scalable Detection of Aquatic Invasive Species Across Landscapes Using eDNA and Community Science. In Prep.

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Funding for this project was provided by the Minnesota Environment and Natural Resources Trust Fund as recommended by the Minnesota Aquatic Invasive Species Research Center (MAISRC) and the Legislative-Citizen Commission on Minnesota Resources (LCCMR)

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Link, Denver; Larson, Eric R; Garcia, Samantha M; Chun, Chan Lan; Edblad, Katarina; Verhoeven, Michael R; Hansen, Gretchen JA. (2025). Data in support of: Scalable Detection of Aquatic Invasive Species Across Landscapes Using eDNA and Community Science. Retrieved from the Data Repository for the University of Minnesota (DRUM), https://doi.org/10.13020/c845-ct45.

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