Dark With Sucrose
	For Labeling patterns
		files_template.csv
		RT_input_template.csv
		DarkGrow_T0_R1.mzML
		DarkGrow_T0_R2.mzML
		DarkGrow_T0_R3.mzML
		DarkGrow_T0_R4.mzML
		DarkGrow_T0_R5.mzML
		DarkGrow_T1_R1.mzML
		DarkGrow_T1_R2.mzML
		DarkGrow_T1_R3.mzML
		DarkGrow_T1_R4.mzML
		DarkGrow_T1_R5.mzML
		DarkGrow_T2_R1.mzML
		DarkGrow_T2_R2.mzML
		DarkGrow_T2_R3.mzML
		DarkGrow_T2_R4.mzML
		DarkGrow_T2_R5.mzML
		DarkGrow_T4_R1.mzML
		DarkGrow_T4_R2.mzML
		DarkGrow_T4_R3.mzML
		DarkGrow_T4_R4.mzML
		DarkGrow_T4_R5.mzML
		DarkGrow_T8_R1.mzML
		DarkGrow_T8_R2.mzML
		DarkGrow_T8_R3.mzML
		DarkGrow_T8_R4.mzML
		DarkGrow_T8_R5.mzML
		DarkGrow_T15m_3R.mzML
		DarkGrow_T15m_R1.mzML
		DarkGrow_T15m_R2.mzML
		DarkGrow_T15m_R4.mzML
		DarkGrow_T15m_R5.mzML
		DarkGrow_T16_R1.mzML
		DarkGrow_T16_R2.mzML
		DarkGrow_T16_R3.mzML
		DarkGrow_T16_R4.mzML
		DarkGrow_T16_R5.mzML
		DarkGrow_T30m_R1.mzML
		DarkGrow_T30m_R2.mzML
		DarkGrow_T30m_R3.mzML
		DarkGrow_T30m_R4.mzML
		DarkGrow_T30m_R5.mzML
		DarkGrow_T32_R1.mzML
		DarkGrow_T32_R2.mzML
		DarkGrow_T32_R3.mzML
		DarkGrow_T32_R4.mzML
		DarkGrow_T32_R5.mzML
		DarkGrow_T64_R1.mzML
		DarkGrow_T64_R2.mzML
		DarkGrow_T64_R3.mzML
		DarkGrow_T64_R4.mzML
		DarkGrow_T64_R5.mzML
	For Pool Sizes
		Ghostweed_Quantification_Input.csv
		quantification_template.csv
		DarkGrow_T0_Pool_R1.mzML
		DarkGrow_T0_Pool_R2.mzML
		DarkGrow_T0_Pool_R3.mzML
		DarkGrow_T0_Pool_R4.mzML
		DarkGrow_T0_Pool_R5.mzML
	README.txt

Light With Sucrose
	For Labeling Patterns
		files_template.csv
		RT_Input_Template.csv
		Light_W_Suc_T0_R1.mzML
		Light_W_Suc_T0_R2.mzML
		Light_W_Suc_T0_R3.mzML
		Light_W_Suc_T0_R4.mzML
		Light_W_Suc_T0_R5.mzML
		Light_W_Suc_T1_R1.mzML
		Light_W_Suc_T1_R2.mzML
		Light_W_Suc_T1_R3.mzML
		Light_W_Suc_T1_R4.mzML
		Light_W_Suc_T1_R5.mzML
		Light_W_Suc_T2_R1.mzML
		Light_W_Suc_T2_R2.mzML
		Light_W_Suc_T2_R3.mzML
		Light_W_Suc_T2_R4.mzML
		Light_W_Suc_T2_R5.mzML
		Light_W_Suc_T4_R1.mzML
		Light_W_Suc_T4_R2.mzML
		Light_W_Suc_T4_R3.mzML
		Light_W_Suc_T4_R4.mzML
		Light_W_Suc_T4_R5.mzML
		Light_W_Suc_T8_R1.mzML
		Light_W_Suc_T8_R2.mzML
		Light_W_Suc_T8_R3.mzML
		Light_W_Suc_T8_R4.mzML
		Light_W_Suc_T8_R5.mzML
		Light_W_Suc_T16_R1.mzML
		Light_W_Suc_T16_R2.mzML
		Light_W_Suc_T16_R3.mzML
		Light_W_Suc_T16_R4.mzML
		Light_W_Suc_T16_R5.mzML
		Light_W_Suc_T32_R1.mzML
		Light_W_Suc_T32_R2.mzML
		Light_W_Suc_T32_R3.mzML
		Light_W_Suc_T32_R4.mzML
		Light_W_Suc_T32_R5.mzML
		Light_W_Suc_T64_R1.mzML
		Light_W_Suc_T64_R2.mzML
		Light_W_Suc_T64_R3.mzML
		Light_W_Suc_T64_R4.mzML
		Light_W_Suc_T64_R5.mzML
		Light_W_Suc_T128_R1.mzML
		Light_W_Suc_T128_R2.mzML
		Light_W_Suc_T128_R3.mzML
		Light_W_Suc_T128_R4.mzML
		Light_W_Suc_T128_R5.mzML
	For Quantification
		Quantification_input_template.csv
		RTinput_template.csv
		Light_W_Suc_Pool_T0_R1.mzML
		Light_W_Suc_Pool_T0_R2.mzML
		Light_W_Suc_Pool_T0_R3.mzML
		Light_W_Suc_Pool_T0_R4.mzML
		Light_W_Suc_Pool_T0_R5.mzML

	README.txt

Light Without Sucrose
	For Labeling Patterns
		files_template.csv
		RT_Input_Template.csv
		Light_No_Suc_T0_R1.mzML
		Light_No_Suc_T0_R2.mzML
		Light_No_Suc_T0_R3.mzML
		Light_No_Suc_T1_R1.mzML
		Light_No_Suc_T1_R2.mzML
		Light_No_Suc_T1_R3.mzML
		Light_No_Suc_T2_R1.mzML
		Light_No_Suc_T2_R2.mzML
		Light_No_Suc_T2_R3.mzML
		Light_No_Suc_T4_R1.mzML
		Light_No_Suc_T4_R2.mzML
		Light_No_Suc_T4_R3.mzML
		Light_No_Suc_T8_R1.mzML
		Light_No_Suc_T8_R2.mzML
		Light_No_Suc_T8_R3.mzML
		Light_No_Suc_T15m_R1.mzML
		Light_No_Suc_T15m_R2.mzML
		Light_No_Suc_T15m_R3.mzML
		Light_No_Suc_T16_R1.mzML
		Light_No_Suc_T16_R2.mzML
		Light_No_Suc_T16_R3.mzML
		Light_No_Suc_T30m_R1.mzML
		Light_No_Suc_T30m_R2.mzML
		Light_No_Suc_T30m_R3.mzML
		Light_No_Suc_T32_R1.mzML
		Light_No_Suc_T32_R2.mzML
		Light_No_Suc_T32_R3.mzML
		Light_No_Suc_T64_R1.mzML
		Light_No_Suc_T64_R2.mzML
		Light_No_Suc_T64_R3.mzML
	For Pool Sizes
		files_quantification.csv
		Quantification_input_template.csv
		Light_No_Suc_Pool_T0_R1.mzML
		Light_No_Suc_Pool_T0_R2.mzML
		Light_No_Suc_Pool_T0_R3.mzML
		Light_No_Suc_Pool_T0_R4.mzML
		Light_No_Suc_Pool_T0_R5.mzML
	README.txt

Modeling_Data_Extracted
	All_Data_N0.csv
	README.txt
	Model_Setup_Experiments.R

Pool_Size_Data
	Extracted Data.xlsx
	README.txt