This readme.txt file was generated on 2023-03-07 by Timothy Johnson

Recommended citation for the data: Foster-Hartnett, Dawn; Dvorak, Cheryl; Johnson, Timothy. (2023). FUTIs: An In-person or Online Graphing, Bioinformatics, and Scientific Literacy Exercise that Explores the Presence of Antibiotic Resistance in Foodborne Urinary Tract Infections. Retrieved from the Data Repository for the University of Minnesota. https://doi.org/10.13020/j0xq-3q17.

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GENERAL INFORMATION
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1. Title of Dataset: FUTIs: An In-person or Online Graphing, Bioinformatics, and Scientific Literacy Exercise that Explores the Presence of Antibiotic Resistance in Foodborne Urinary Tract Infections

2. Author Information

	Author Contact:  Timothy Johnson (tjj@umn.edu)

	Name:  Dawn Foster-Hartnett
	Institution: University of Minnesota
	Email: dmfoster@umn.edu
	ORCID:


	Name:  Cheryl Dvorak
	Institution: University of Minnesota
	Email: dvora013@umn.edu
	ORCID:


	Name:  Timothy Johnson
	Institution: University of Minnesota
	Email: tjj@umn.edu
	ORCID:

3. Date published or finalized for release: 2023-03-01

4. Date of data collection (single date, range, approximate date): 2023 to 2023

5. Geographic location of data collection (where was data collected?): Minnesota, USA

6. Information about funding sources that supported the collection of the data: None

7. Overview of the data (abstract):
This is the dataset for instructors to use when implementing coursework into their curriculum. These are assembled genomes from retail poultry meat.


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SHARING/ACCESS INFORMATION
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1. Licenses/restrictions placed on the data: CC0 1.0 Universal (http://creativecommons.org/publicdomain/zero/1.0/)

2. Links to publications that cite or use the data: Forthcoming.

3. Was data derived from another source? NA
	If yes, list source(s):

4. Terms of Use: Data Repository for the U of Minnesota (DRUM) By using these files, users agree to the Terms of Use. https://conservancy.umn.edu/pages/drum/policies/#terms-of-use


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DATA & FILE OVERVIEW
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File List

	Filename: GCC3.fasta 
	Short description: Genome GCC3

	Filename: GCC10.fasta 
	Short description: Genome GCC10

	Filename: GCC14.fasta 
	Short description: Genome GCC14

	Filename: RS260.fasta 
	Short description: Genome RS260

	Filename: GCC4.fasta 
	Short description: Genome GCC4

	Filename: RS249.fasta 
	Short description: Genome RS249

	Filename: RS254.fasta 
	Short description: Genome RS254

	Filename: RS271.fasta 
	Short description: Genome RS271

	Filename: RS275.fasta 
	Short description: Genome RS275

	Filename: RS297.fasta 
	Short description: Genome RS297

2. Relationship between files: None


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METHODOLOGICAL INFORMATION
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1. Description of methods used for collection/generation of data: Bacteria were isolated from retail meats sampled in Minnesota. One E. coli isolate per sample was further grown in LB broth. DNA was extracted from this growth using a Qiagen DNEasy Kit. DNA was subsequently sequenced using an Illumina MiSeq 2X300 PE V3 kit. Genomes were assembled using Spades. Files provided in this repository are the ultimate assembly files for each genome.

2. Methods for processing the data: NA

3. Instrument- or software-specific information needed to interpret the data: None

4. Standards and calibration information, if appropriate: None

5. Environmental/experimental conditions: NA

6. Describe any quality-assurance procedures performed on the data: NA

7. People involved with sample collection, processing, analysis and/or submission: Authors