This codebook.txt file was generated on 2021-01-22 by Katie Barrick This codebook.txt file was updated on 2021-01-25 by Adam Kostanecki ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset An urban-rural spotlight: evolution at small spatial scales among urban and rural populations of common ragweed 2. Author Information Principal Investigator Contact Information Name: Adam Kostanecki Institution: University of Minnesota Email: kosta02@umn.edu Associate or Co-investigator Contact Information Name: Amanda J. Gorton Institution: University of Minnesota Associate or Co-investigator Contact Information Name: David Moeller Institution: University of Minnesota 3. Date of data collection: 2019-02-09 to 2018-06-18 4. Geographic location of data collection: 5. Information about funding sources that supported the collection of the data: Sponsorship: EEB Research Award (University of Minnesota); University of Minnesota Undergraduate Research Opportunities Program; NSF PGRP grant #1856744 -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data: CC0 1.0 Universal 2. Links to publications that cite or use the data: 3. Links to other publicly accessible locations of the data: None. 4. Links/relationships to ancillary data sets: None. 5. Was data derived from another source? No. 6. Recommended citation for the data: Kostanecki, Adam; Gorton, Amanda J; Moeller, David A. (2021). An urban-rural spotlight: evolution at small spatial scales among urban and rural populations of common ragweed. Retrieved from the Data Repository for the University of Minnesota, http://hdl.handle.net/11299/217706. https://doi.org/10.13020/hr1h-4f34 --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: urban_heterogeneity_alldata.csv Short description: Greenhouse Traits Master Sheet B. Filename: GerminationPerGenotype.csv Short description: Germination per Genotype (Maternal Family) C. Filename: PercentGerminationPerCell.csv Short description: Percent Germination per Individual Tray Cell D. Filename: DaysToGerm.csv Short description: Days to Germination 2. Relationship between files: File A is from Greenhouse Experiment, Files B-C are from Growth Chamber Experiment. 3. Additional related data collected that was not included in the current data package: There is no addition related data that was collected. 4. Are there multiple versions of the dataset? No. -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: 2. Methods for processing the data: Submitted data were collected from both experiments, no metadata was submitted. 3. Instrument- or software-specific information needed to interpret the data: No specific information required. 4. Standards and calibration information, if appropriate: N/A. 5. Environmental/experimental conditions: Data were collected in Growth Chamber and Greenhouse conditions. 6. Describe any quality-assurance procedures performed on the data: Maternal families were arranged using a stratified random approach. 7. People involved with sample collection, processing, analysis and/or submission: Authors listed. ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: urban_heterogeneity_alldata.csv ----------------------------------------- 1. Number of variables: 21 2. Number of cases/rows: 390 rows 3. Missing data codes: Empty cell Data not collected 4. Variable List A. Name: Tag Description: Plant tag to identify in greenhouse experiment. B. Name: Region Description: Source region for seeds (Urban or Rural). C. Name: Population Description: Source population within region. SU# = St. Louis Urban Population # SR# = St. Louis Rural Population # D. Name: Genotype Description: Maternal family (approx. 10 per population) E. Name: ID Description: Population & Maternal Family using the formula 'Population.Genotype'. i.e. Plant from Rural Population 10 & Genotype 2 would have ID '10.2'. F. Name: Replicates/Genotype Description: Denotes number of seeds used from each genotype. Only one value entered per unique ID. G. Name: AvgSeedWt Description: Average Seed weight (mass) in mg. H. Name: Tray Description: Planting used in germination experiment. I. Name: CellID Description: Denotes cell location within planting tray. J. Name: Height7wks Description: Plant height (cm) measured 7 weeks post-germination. K. Name: Height9wks Description: Plant height (cm) measured 9 weeks post-germination. L. Name: Height11wks Description: Plant height (cm) measured 11 weeks post-germination. M. Name: Height13wks Description: Plant height (cm) measured 13 weeks post-germination. N. Name: Bolting Description: Initiation of reproduction, scored as the date on which a reproductive bud at the apical meristem first appeared. O. Name: Male FT Description: Male flowering time was scored as the date of first observed open anther. P. Name: Female FT Description: Female flowering time was scored as the date of the first visible stigma. Q. Name: All Female Description: Individual plants with only female flowering present. 0 = Male flowers present 1 = Only female flowers present R. Name: LeafArea (cm2) Description: Leaf area of scanned leaf images as reported by ImageJ in square cm. S. Name: LeafPerimeter (cm) Description: Leaf perimeter of scanned leaf images as reported by ImageJ in cm. T. Name: Division Index Description: A measure of leaf lobing. Leaf division index was calculated by dividing leaf perimeter by the square root of leaf area. U. Name: Dissection Index Description: A measure of leaf lobing. Leaf dissection index was calculated by dividing leaf perimeter by twice the square root of the product of leaf area and π, or the formula: DI = Perimeter / (2√Area x π). ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: GerminationPerGenotype.csv ----------------------------------------- 1. Number of variables: 7 2. Number of cases/rows: 616 rows 3. Missing data codes: Empty cell 4. Variable List A. Name: Region Description: Source region for seeds (Urban or Rural). B. Name: Population Description: Source population within region. ASTLU# = Amanda St. Louis Urban Population # ASTLR# = Amanda St. Louis Rural Population # C. Name: Genotype Description: Maternal family source from within a given population. D. Name: Chamber Description: Growth chamber used to germinate seeds (1 or 2). E. Name: Population.Genotype.Chamber Description: Merged identification following the scheme 'Population_Genotype.Chamber'. F. Name: SeedsPlanted Description: Number of seeds planted within a chamber for a given genotype. G. Name: Germinants Description: Number of successful germinates for a given genotype, within a given chamber. ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: PercentGerminationPerCell.csv ----------------------------------------- 1. Number of variables: 12 2. Number of cases/rows: 616 rows 3. Missing data codes: Empty cells 4. Variable List A. Name: Unique Cell ID Description: Cell identifier using the scheme 'Tray.CellID' B. Name: Chamber Description: Growth chamber used to germinate seeds (1 or 2). C. Name: Tray Description: Tray used to germinate seeds (1 through 8). D. Name: Cell ID Description: Planting cell within a given tray. E. Name: Region Description: Source region for seeds (Urban or Rural). F. Name: Population Description: Source population within region. ASTLU# = Amanda St. Louis Urban Population # ASTLR# = Amanda St. Louis Rural Population # G. Name: Genotype Description: Maternal family source from within a given population. H. Name: Replicate Description: Replicate number for a given genotype. I. Name: Number of Seeds Planted Description: Count of seeds planted in a given cell. J. Name: Number of Germinants Description: Count of germinates for a given cell. K. Name: Percent.Germination Description: Proportion of germinates given number of seeds planted. L. Name: maternalfamily Description: Plant identifier using the scheme 'Population.Genotype'. ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: DaysToGerm.csv ----------------------------------------- 1. Number of variables: 12 2. Number of cases/rows: 787 rows 3. Missing data codes: Empty cell. 4. Variable List A. Name: Unique Cell ID Description: Value labels if appropriate B. Name: Chamber Description: Growth chamber used to germinate seeds (1 or 2). C. Name: Tray Description: Tray used to germinate seeds (1 through 8). D. Name: Cell ID Description: Planting cell within a given tray. E. Name: Replicate Description: Replicate number for a given genotype. F. Name: Region Description: Source region for seeds (Urban or Rural). G. Name: Population Description: Source population within region. ASTLU# = Amanda St. Louis Urban Population # ASTLR# = Amanda St. Louis Rural Population # H. Name: Genotype Description: Maternal family source from within a given population. I. Name: Replicate Description: Replicate number for a given genotype. J. Name: Avg seed wt Description: Average Seed weight (mass) in mg, averaged from total mass of seeds for each genotype. K. Name: Days_to_Germ Description: Days from planting to first visible cotyledon. L. Name: ID Description: Plant identifier using the Population number & Genotype number (i.e. Population ASTLU11 Genotype 39 would have ID: 11.39).