This codebook.txt file was generated on 20170623 by Valerie Collins


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GENERAL INFORMATION
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1. Title of Dataset: Origin and development of fungal communities in an engineered biofilter 


2. Author Information


  Principal Investigator Contact Information
        Name: Jonathan Schilling
           Institution: University of Minnesota
           Email: schillin@umn.edu


  Associate or Co-investigator Contact Information
        Name: Zewei Song
           Institution: University of Minnesota
           Email: songx208@umn.edu


  Associate or Co-investigator Contact Information
           Name: Jason Oliver
           Institution: Cornell
           Email: jpo53@cornell.edu


3. Information about funding sources that supported the collection of the data: 

United States Department of Agriculture, National Institution of Food and Agriculture, Agriculture and Food Research Initiative; the University of Minnesota Agricultural Experiment Station


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SHARING/ACCESS INFORMATION
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1. Licenses/restrictions placed on the data: Attribution-NonCommercial-NoDerivs 3.0 United States


2. Recommended citation for the data:

Oliver, Jason; Song, Zewei; Schilling, Jonathan S. (2017). Origin and development of fungal communities in an engineered biofilter. Retrieved from the Data Repository for the University of Minnesota, http://hdl.handle.net/11299/188032.


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DATA & FILE OVERVIEW
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1. File List
   A. Filename: BioFilter.zip       
      Short description: ITS1 sequencing data for "Jason" fungal community samples      


        
   B. Filename: Schilling_Project_046_Miseq_Run_Summary.xlsx       
      Short description: MiSeq Project Run Summary        


        
   C. Filename: Run_Summary_ArchivalVersion.zip       
      Short description: Archive Version of the Excel file (.csv format)


2. Relationship between files:        

The BioFilter contains 42 FASTQ files. 2 files are Extract Control results, 38 are results for the Jason samples, and two are Mockwood Community files. The Project Run Summary file provides additional information about the project run for 19 different Jason samples.

Jason 1-3 are taken from initial (Year 0) woodchip media

Jason 4-6 are from initial (Year 0) manure samples

Jason 7-9 are from microbial biofilms on the woodchip media in the inlet of the biofilter harvested after 1 year of biofilter operation

Jason 10-12 are from microbial biofilms on the woodchip media in the outlet of the biofilter harvested after 1 year of biofilter operation

Jason 13-15 are from microbial biofilms on the woodchip media in the inlet of the biofilter harvested after 3 year of biofilter operation

Jason 16-18 are from microbial biofilms on the woodchip media in the outlet of the biofilter harvested after 3 year of biofilter operation