------------------- GENERAL INFORMATION ------------------- 1. Elizabeth Rasmussen MS Thesis Appendix 1: Ring-billed and Franklin's Gull AIV rT-PCR and ELISA Results. 2. Author Information Principal Investigator Contact Information Name: Elizabeth Rasmussen Email: rasmu611@umn.edu Associate or Co-investigator Contact Information Name: Carol Cardona, DVM, PhD Institution: University of Minnesota, Department of Veterinary and Biomedical Sciences Address: 205D Veterinary Science Building, 1971 Commonwealth Avenue, St. Paul, MN 55108 Email: ccardona@umn.edu ORCID: 0000-0003-3656-1865 Associate or Co-investigator Contact Information Name: Meggan Craft, DVM, PhD Institution: University of Minnesota, Department of Veterinary Population Medicine Address: 385 C AS/VM, 1988 Fitch Avenue, St. Paul, MN 55108 Email: craft@umn.edu ORCID: 0000-0001-5333-8513 Associate or Co-investigator Contact Information Name: Marie Culhane, DVM, PhD Institution: University of Minnesota, Department of Veterinary Population Medicine Address: 385F AS/VM, 1988 Fitch Avenue, St. Paul, MN 55108 Email: grame003@umn.edu ORCID: 0000-0002-3547-7576 Associate or Co-investigator Contact Information Name: Francesca Cuthbert, PhD Institution: University of Minnesota, Department of Fisheries, Wildlife and Conservation Biology Address: 135 Skok Hall, 2003 Upper Buford Circle, St. Paul, MN 55108 Email: cuthb001@umn.edu 3. Date of data collection: 2016/10/28 to 2017/09/28 4. Geographic location of data collection (where was data collected?): Minnesota, USA 5. Information about funding sources that supported the collection of the data: This work was funded by the Environment and Natural Resources Trust Fund from the Legislative–Citizen Commission on Minnesota Resources Project 00058106 and by the Minnesota Department of Agriculture from the Agriculture Experimental Station's UMN Response to Avian Influenza Projects 00071938 and 00085606 -------------------------- SHARING/ACCESS INFORMATION -------------------------- Suggested data citation: Cuthbert, Francesca; Culhane, Marie; Rasmussen, Elizabeth; Craft, Meggan; Cardona, Carol. (2021). Appendix 1: Ring-billed and Franklin's Gull AIV rT-PCR and ELISA Results. Retrieved from the Data Repository for the University of Minnesota, https://doi.org/10.13020/9b7h-0973. 1. Licenses/restrictions placed on the data: CC0 1.0 Universal 2. Links to publications that cite or use the data: https://conservancy.umn.edu/handle/11299/224901 https://doi-org.ezp2.lib.umn.edu/10.1637/11848-041718-Reg.1 3. Links to other publicly accessible locations of the data: NA 4. Links/relationships to ancillary data sets: NA 5. Was data derived from another source? No --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: ReadMe.txt Short description: Description of data B. Filename: Raw_Data_Sheet.csv Short description: Raw capture, morphometric, PCR, and serology data for Franklin's Gulls and Ring-billed Gulls C. Filename: Location_Summary.csv Short description: Summary statistics for PCR and serology results grouped according to species and sampling location D. Filename: Age_Summary.csv Short description: Summary statistics for PCR and serology results grouped according to species and age of sampled gull E. Filename: TimePeriod_Summary.csv Short description: Summary statistics for PCR and serology results grouped according to species and time period in which gulls were sampled F. Filename: Proportion_Test_Analyses_Results.csv Short description: Statistical test summaries for a proportion test analysis 2. Relationship between files: Files C, D, and E contain summary statistics of the raw data presented in file B. File F contains model results and code to replicate. 3. Additional related data collected that was not included in the current data package: None 4. Are there multiple versions of the dataset? No -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: See methods in associated publication: https://hdl.handle.net/11299/224901 2. Methods for processing the data: See methods in associated publication: https://hdl.handle.net/11299/224901 3. Instrument- or software-specific information needed to interpret the data: NA 4. Standards and calibration information, if appropriate: NA 5. Environmental/experimental conditions: NA 6. Describe any quality-assurance procedures performed on the data: NA 7. People involved with sample collection, processing, analysis and/or submission: Elizabeth Rasmussen, Carol Cardona, Meggan Craft, Francesca Cuthbert, Marie Culhane, Madeline Grunklee, Todd Froberg ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: Raw_Data_Sheet ----------------------------------------- 1. Number of variables: 31 2. Number of cases/rows: 1592 3. Missing data codes: "NA" 4. Variable List A. date date date of capture B. time_period factor sampling season C. latitude.y numeric latitude of capture location D. longitude.x numeric longitude of capture location E. city factor name of nearest city to capture location F. county factor name of county in which captured G. time factor sampling time window H. investigators character individuals involved in data collection and their roles I. location factor sampling location J. bird_id factor unique identifier for each bird captured K. species factor species of captured bird L. weight.g numeric weight of captured bird in grams M. keel.mm numeric length of captured bird's keel in millimeters N. head_to_beak.mm numeric length from tip of beak to crown of head in millimeters O. age factor discretized captured bird age HY hatch-year <1 year old JUV juvenile 1-2 years old AD adult >2 years old P. bci numeric body condition index score calculated according to (Boersma & Ryder 1983): body weight (g) / (keel length (mm) + head to beak length (mm)) Q. op_swab_id factor unique identifier for oropharyngeal DNA sampling swap R. op_mcroc_id factor unique identifier for submission to DNA sequencing laboratory (Mid-Central Research and Outreach Center) S. op_pcr_notes character qualitative notes regarding the pcr amplification curve for the oropharyngeal sampling swap T. cl_swab_id factor unique identifier for cloacal DNA sampling swap U. cl_mcroc_id factor unique identifier for submission to DNA sequencing laboratory (Mid-Central Research and Outreach Center) V. cl_pcr_notes character qualitative notes regarding the pcr amplification curve for the cloacal sampling swap W. serology_sample_id factor unique identifier for blood sample X. op_pcr_result factor binary evaluation of AIV detection via oropharyngeal sampling swap POS AIV DNA detected finite cycle threshold for oropharyngeal DNA sample (op_pcr_ct) NEG AIV DNA not detected no finite op_pcr_ct Y. op_pcr_ct numeric cycle threshold for detection of AIV DNA via oropharyngeal sampling swap; "Inf" if not detected Z. cl_pcr_result factor binary evaluation of AIV detection via cloacal sampling swap POS AIV DNA detected finite cycle threshold for cloacal DNA sample (cl_pcr_ct) NEG AIV DNA not detected no finite cl_pcr_ct AA. cl_pcr_ct numeric cycle threshold for detection of AIV DNA via cloacal sampling swap; "Inf" if not detected AB. serology_result factor binary evaluation of AIV detection via ELISA performed on blood sample POS AIV antibodies detected serology sample/negative ratio (serology_sn) < 0.5 NEG AIV antibodies not detected serology_sn >= 0.5 AC. serology_sn numeric sample/negative (S/N) ratio for detection of AIV antibodies in blood sample; "Inf" if not detected AD. band_id factor unique identifier for size 4A United States Geological Survey (USGS) aluminum legband band applied to captured birds (Ring-billed Gulls only) AE. color_band_id factor unique identifier for a white-on-red alpha-numeric plastic legband applied to captured birds (Ring-billed Gulls only)