This readme.txt file was generated on <20241219> by Recommended citation for the data: ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset 2. Author Information Principal Investigator Contact Information Name:Gerard Cramer Institution: University of Minnesota Address: 1365 Gortner Ave, St Paul, MN 55418 Email: gcramer@umn.edu ORCID: https://orcid.org/0000-0003-2691-3417 Associate or Co-investigator Contact Information Name: Drew Swartz Institution: University of Minnesota Address: 1365 Gortner Ave, St Paul, MN 55418 Email: swart205@umn.edu ORCID: https://orcid.org/0000-0003-3619-7055 Associate or Co-investigator Contact Information Name: Institution: University of Minnesota Address: 1365 Gortner Ave, St Paul, MN 55418 Email: eshepley1@gmail.com ORCID: https://orcid.org/0000-0002-9663-7385 3. Date published or finalized for release: 20241219 4. Date of data collection (single date, range, approximate date) 20230601 - 20241219 5. Geographic location of data collection (where was data collected?): Minnesota 6. Information about funding sources that supported the collection of the data: This research was supported by the Council of Dairy Cattle Breeding, the Uni- versity of Minnesota College of Veterinary Medicine and Agricultural Experi- ment Station funding program (Signature Program Funding, accession number 1026927). Drew Swartz was partially funded by the USDA National Institute of Food and Agriculture Food and Agricultural Science National Needs Graduate Fellowship in Dairy Production Systems (proposal number 2020-08149 and ac- cession number 1025222 7. Overview of the data (abstract): This contains the data and the R code used for the published paper called "Evaluating cow identification reliability of a camera- based locomotion and body condition scoring system in dairy cows" -------------------------- SHARING/ACCESS INFORMATION -------------------------- 1. Licenses/restrictions placed on the data:CCO 2. Links to publications that cite or use the data:https://www.jdscommun.org/article/S2666-9102(24)00186-8/fulltext 3. Was data derived from another source? No If yes, list source(s): 4. Terms of Use: Data Repository for the U of Minnesota (DRUM) By using these files, users agree to the Terms of Use. https://conservancy.umn.edu/pages/policies/#drum-terms-of-use --------------------- DATA & FILE OVERVIEW --------------------- 1. File List A. Filename: word-reference-landscape.docx Short description: File that gives the output in Microsoft Word. B. Filename: saved_image.PNG Short description: Picture of cows used in Materials and Methods. C. Filename: references.bib Short description: File used for the bibliography. D. Filename: index.qmd Short description: This file is the mother file and will source and install packages and run all of the other files. E. Filename: "ID Tags.Rproject" Short description: This is the R project that keeps all of the files together. F. Filename: custom-reference.docx Short description: This file creates the format of the references. G. Filename: 99-references.qmd Short description: This file creates the references for the paper. H. Filename: _quarto.yml Short description: This file sets up the structure used to knit. I. Folder: 00_Output Short description: This contains the files used for the results. - Combined.rda: Contains the finalized data after processing. - in_text_results.r: An R script to produce the in-text results. J. Folder: 000_code_files Short description: This contains the R files to run the scripts for data processing and creating the figure. - combined_Script.r: Combines results from Visit 1 and Visit 2 for use. - Figure_Script.r: Creates the figure for the paper. - Visit_1.r: Processes the data from Visit 1. - Visit_2.r: Processes the data from Visit 2. K. Folder: 0000_Data Short description: Contains folders for raw and processed data. - Combined: Contains content relating to combined data. - 3 Cows.png: The file of 3 cows. - Filter_Graph.rda: Data related to graphs. - LACT.csv: File related to lactation for providing demographics to cows. - Updated_ID_Check: Confirms updated cow demographics. - show id vatag.csv: A DairyComp file. - Visit_1: Contains various Excel files that pertain to the data from Visit 1. - Visit_2: Contains various Excel files that pertain to the data from Visit 2. 2. Relationship between files: - `index.qmd`: The main file that sources, installs packages, and runs all other files. - `"ID Tags.Rproject"`: Organizes and links all related files in the R project. - `references.bib`, `custom-reference.docx`, `99-references.qmd`: Work together to create and format the references section. - `word-reference-landscape.docx`, `_quarto.yml`: Define the document structure and formatting for the final output. - `00_Output`: Stores the results (`Combined.rda`) and scripts (`in_text_results.r`) for in-text results. - `000_code_files`: Contains scripts for data processing (`Visit_1.r`, `Visit_2.r`) and figure creation (`Figure_Script.r`), with `combined_Script.r` integrating data from multiple visits. - `0000_Data`: Stores raw and intermediate data for visits and updated IDs, which feed into the scripts in `000_code_files`. - `saved_image.PNG`: Used in the Materials and Methods section of the document. -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Description of methods used for collection/generation of data: All data colletion was performed by recording in excel 2. Methods for processing the data: The data was collected and generated by Drew by recording the cows records from cattleeye.com 3. Instrument- or software-specific information needed to interpret the data: R Studio/R 4. Standards and calibration information, if appropriate: NA 5. Environmental/experimental conditions:NA 6. Describe any quality-assurance procedures performed on the data:NA 7. People involved with sample collection, processing, analysis and/or submission: ----------------------------------------- DATA-SPECIFIC INFORMATION FOR: [FILENAME] ----------------------------------------- 1. Number of variables: 2. Number of cases/rows: 3. Missing data codes: Code/symbol Definition Code/symbol Definition 4. Variable List A. Name: Description: Value labels if appropriate B. Name: Description: Value labels if appropriate